Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3728 |
Symbol | |
ID | 4175508 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4492590 |
End bp | 4493741 |
Gene Length | 1152 bp |
Protein Length | 383 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638056758 |
Product | Alpha-L-arabinofuranosidase |
Protein accession | YP_663284 |
Protein GI | 109900029 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3507] Beta-xylosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCACACAC GTTATTTAAC TCTATTGGCT TTAAGTGCCG CAATGCTTTC AGGTTGTTCA GAACAATCTA GCCACAAAGA AGCCGCAAGC GATACGTTGC AAACTACTGC GAGCTCGAAC GCGCCTGCAA CACATCAACA AAAAACGGCA AAGGCAGAGC ACAAAGGCTT GGATGAGTAT GGTTCTAAAT CTTTACCTTT AGTCAGCAAT ATATATACCG CAGACCCTTC TGCACATGTG TTTGACGGTA AGTTGTATAT CTACCCGTCA CACGATTACG AGGCGGGCAT CCCACAAAAT GATAACGGTG ATCATTTCGC CATGCGTGAT TATCATATCC TGTCCATGAA TGAAGTCGGC GGAGAAGTCA CTGATCATGG CGTAGCGCTA TCTGTTGATG ATGTGCCTTG GGCGGGTCGT CAAATGTGGG CGCCTGATGC TGCCAGCAAA AACGGCCTGT ATTACCTCTA TTTTCCGTTA AAAGACCAAC AAGATATTTT TCGTATCGGT GTGGCTACAA GTGATTCACC TGTTGGCCCG TTTACGCCTG AAGCAGAGCC AATGGCCGGC AGCTTTAGCA TGGATCCCGC CGTATTTGAG GATGATGACC AACAGCACTA TTTGTTCTTT GGTGGCATTT GGGGAGGCCA ATTGCAGCGC TGGACAAAAG GTGAATACAG TCCCCAAGAT GACTACCCTG CAGATGATGC ACCAGCCCTG ATGCCCAAGG CCGTGAAGCT AGCAGATAAC ATGGTGTCTA TGGATGGTGA GCCACAAGAC ATCATGATTT TAGATGAAAG CGGCAAGCCC ATTAAACAGG GGGATTTAGA GCGCCGGTTC TTTGAAGCCG CTTGGGTACA TAAGTATCAA GGAAATTACT ACCTGTCTTA CTCGACTGGC GATACGCACA AAATTGTTTA TGCCATGAGT GAGAACCTCA TGGGGCCATA TACCTTTAAG GGGGTGGTAC TTGACCCCGT TATCGGTTGG ACGAATCATC ATTCTATCGC TGAGTTTCAA GGCAAATGGT ATTTGTTCTA TCACGATAGC ACGTTATCAA AAGGGCAAAC CCACTTACGG AGTGTGAAGA TGGCAGAGCT GAAATATAAC GAGGATGGCA CGATTGTCCC TTACCAAGCT TATTATCAAT AA
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Protein sequence | MHTRYLTLLA LSAAMLSGCS EQSSHKEAAS DTLQTTASSN APATHQQKTA KAEHKGLDEY GSKSLPLVSN IYTADPSAHV FDGKLYIYPS HDYEAGIPQN DNGDHFAMRD YHILSMNEVG GEVTDHGVAL SVDDVPWAGR QMWAPDAASK NGLYYLYFPL KDQQDIFRIG VATSDSPVGP FTPEAEPMAG SFSMDPAVFE DDDQQHYLFF GGIWGGQLQR WTKGEYSPQD DYPADDAPAL MPKAVKLADN MVSMDGEPQD IMILDESGKP IKQGDLERRF FEAAWVHKYQ GNYYLSYSTG DTHKIVYAMS ENLMGPYTFK GVVLDPVIGW TNHHSIAEFQ GKWYLFYHDS TLSKGQTHLR SVKMAELKYN EDGTIVPYQA YYQ
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