| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3641 |
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| Symbol | |
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| ID | 4175421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4389008 |
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| End bp | 4389769 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056671 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_663197 |
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| Protein GI | 109899942 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.143298 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAAAT TTGTTGGAAA AAACGTACTT ATTACTGCAG GTGCACAAGG TATCGGCGAA
GCGATCAGCA AGCACCTGAT CGATAACGGT GCAAACGTGG CTATTCATTA TTTTTCTAGC
AGTGATACGG CTAATAAATT ACTTGAATAT GCAACGAGTA AAGGGGTAAA AGCCGTTGCG
ATCAAGGGCG ATTTAACCGA TGAAGCCGAA GCCAATAGCC TTATCGAAAA AACAGTAGAG
GCCCTCGGGG GCATCAATAT ATTGATTAAT AATGCGGGCT CTTTGGTGGC AAGGCGCTCG
CTCAACGATA TGGATGCCGA GTTTTGGCAC AAAGTTATGG ATATAAACCT AACCTCCATG
ATGTTTGTGA CCCGCGCTGC TGCGCCTTAC TTAGCAAAAA ATGAAAATAG CAGTATCGTC
AATTTAGCGT CTCTTGCAGG TCGTAAAGGT GGCCACGCCG GCTCTTTAGT TTATTCCACC
AGCAAAGGGG CTATTTTAAC TCTGACCCGC GCACTAAGCG CGGAGTTAGG ACCACAAGGA
ACGCGCGTTA ATGCGGTCGC ACCTGGGCTG ATTTTAGGTA CCTCATTTCA CAATACCCAC
ACCACTAAAG AATCGGCTGA TCAAACCATC GCCGGCATTC CTATCCAACG AGCAGGCAAC
GCCGATGACG TAGCGCGAGC TGTGGTCTAT TTGGCCTCAG AATATGATGG CTTCATCACA
GGGGCGACGC TGGATATTAA CGGTGGCGTT TACAACATGT AA
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| Protein sequence | MTKFVGKNVL ITAGAQGIGE AISKHLIDNG ANVAIHYFSS SDTANKLLEY ATSKGVKAVA
IKGDLTDEAE ANSLIEKTVE ALGGINILIN NAGSLVARRS LNDMDAEFWH KVMDINLTSM
MFVTRAAAPY LAKNENSSIV NLASLAGRKG GHAGSLVYST SKGAILTLTR ALSAELGPQG
TRVNAVAPGL ILGTSFHNTH TTKESADQTI AGIPIQRAGN ADDVARAVVY LASEYDGFIT
GATLDINGGV YNM
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