| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3599 |
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| Symbol | |
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| ID | 4175379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4335236 |
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| End bp | 4336594 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056629 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_663155 |
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| Protein GI | 109899900 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACCTCT ACAAGCCTAT GGCGATGCTA TTAATCGCCG TTACCTGCGG GTTGGCCGCG
TGCAGCAGTC AACCTAGCTA CAAAGCCAAA GATACTGAGC AACTGCTTAA ACAGCACGAG
CAGTGGCAAT ACACTCAGCA AAATGCACAG CAGGTTACTT ATCTAACAGA TCTGGTTAGC
ATTGACGAAC TTAAGCCGAT TATTGCCCAA GCATTGGCGA ATAACCCATC TTATAACCAA
ATGCGGGTGG CCTTGAAATT GGCTTATGCA CAACGTCAAG TCACGGCGGC GAACCAATGG
TTTAATGTGA ATGCAGATGT TAACGCTCAG CGCAGCGAAG AAGAAGGTAC GCAATATTCA
TCATCATTAG GTGTGAGCTG GGAAGCCGAC GTATGGCAAA AAAATGCTGA CAGCGTTTCG
GCTCAAGACA TGACTATTGC AAGTACTCAA GCGGATTATC AAGGTGCGCG CGATACGCTG
GTGGCCAGTG TCATACGCAC TTATCTGAAC ATCATTTTAC GCCAAGACCT ACTCGATATT
GAACAGCAAC GCTTAGTGAT GCTAGAAAAC AACGAGCAAA GCATAATCGA GCGTTATCAA
CTTGGGTTAG GTGATTTAGA AGCGCTTGAT ACGGCGCGCA CCAGCACGGC TTCAACGAGG
GCAACCATCG CTGATTACGT TGAACAAATT GCTCAGTCAA AACGCGCTAT TGAAGTGCTA
TTGGGGGTTG ATACGTTGGA CGATCTCTTC GTCTCATCAA CAATGCCTAA TGTGCTGCAA
CCCTTGGCTA ACCTCCCCGT ACAAGATTTG TCTCGTCGTC CTGATCTACA AAGTGCGTTT
TATCAAATTG AAGCAAAGCG ATATTTGGTG GATGTATCTT ATAAAGCGCT ATTACCGTCA
ATTACTTTAT CGGCATCACT GAGCGATTTA GCCAATACAC CCAGCGAAGC CTTACTGAAG
AGTCCGTTGT GGACGTTATT GGGCAATTTA AGCGCCCCGT TATTTCAAGG AGGCGCACTT
CGTGCTCAAA TTGATATCGC AAAACTCAAT GCCGAACAGG CATTTTGGAA CTATCAAGAC
ACACTATTAA CGGCCGTTAA CGAAGTAGAA AATGCCTTAG GGCAAGAGCA ATCCCTTAAG
ACCCAGCAAG CGCAAATCAA CAGTGCATTG CAAAGCGCCC AGCGCAGCTT CAGTAACTAT
CAAAGCAAAT ACCAGCAAGG TTTAGTCGAC ATTTTAGAAT TACTCACAGT GCAACAAACT
GTGTATGACC TGCAAGTTCA ACTAGCACAA CTTAATTACA CCCTACAAAC CAATCGCATT
GATTTAGGCC TCGCACTGGG CCTTGGAGTA TCTTCATGA
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| Protein sequence | MYLYKPMAML LIAVTCGLAA CSSQPSYKAK DTEQLLKQHE QWQYTQQNAQ QVTYLTDLVS
IDELKPIIAQ ALANNPSYNQ MRVALKLAYA QRQVTAANQW FNVNADVNAQ RSEEEGTQYS
SSLGVSWEAD VWQKNADSVS AQDMTIASTQ ADYQGARDTL VASVIRTYLN IILRQDLLDI
EQQRLVMLEN NEQSIIERYQ LGLGDLEALD TARTSTASTR ATIADYVEQI AQSKRAIEVL
LGVDTLDDLF VSSTMPNVLQ PLANLPVQDL SRRPDLQSAF YQIEAKRYLV DVSYKALLPS
ITLSASLSDL ANTPSEALLK SPLWTLLGNL SAPLFQGGAL RAQIDIAKLN AEQAFWNYQD
TLLTAVNEVE NALGQEQSLK TQQAQINSAL QSAQRSFSNY QSKYQQGLVD ILELLTVQQT
VYDLQVQLAQ LNYTLQTNRI DLGLALGLGV SS
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