| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3598 |
|---|
| Symbol | |
|---|
| ID | 4175378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4333998 |
|---|
| End bp | 4335239 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638056628 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_663154 |
|---|
| Protein GI | 109899899 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTT CGCCAACCCC AATCCTTGTC ACTGTTGTTG CAGTCGTGTG TATCGGTTTA
GCCATTATGT ATAACGGCTA CAAAATGGCC GAGAGCGCTA ATGCGCCGCG CCCAGCAGAG
ACGAAGGTTA GCGCACCAAA CGTATCCGTG GTGCTCGCCA CCCCCGGTCA TTATCAGGCC
TATGTCACCG GCCACGGTGA AGCTCAAGCT CACTGGGCAC TCACGCTAAA AGCGCAGGTG
CAAGGCGAAG TGATTGACAT GAGTTCACAG TTCGCCACAG GTAATATCGT CGAAAAAGGC
ACCGTGTTAG CTACGCTTGA CAGCACCCAA TACGCCCAAG CGCTGGCTAG TGCGAAAGCC
ACACTGGCAG AGGCGGAACT TGCTTTACAG GAAGAAAAAG ATTTAGGGAC ACAAGCCAAA
CGTGAATGGC AGCGTTCAGG CGTTACCCAA GCGCCAAGTT CACCCTTGGT ATATCGCACG
TTACAACTAG AGGCAGCTCA GGCCAATGCT GATAACGCCT TGTTTGCACT AAAAACCGCC
CAGCGCGATG AAAGAAATAC GCATATATCA GCCGCCTTTG ACGGCGTTAT TTTAAGCCGA
GATATCGATT TAGGCAGCTA CGTAAATATT GGCGATACTA TCGCCACACT TAACAGCACG
GATAAAGTAG AAATAGCCGT GCCTTTATCT TTAGCCCAGT GGCAAAATTT AGGGGGTGAA
TTGGCTGCTC CTGTCTTTTT GCAAGATGTG ACCACGGGCA CACGTTGGAC AGGCTATATT
GCCCGTTTCG AACAGCATTT AGATGCTAAC TCCCGCCAGC GCAACGTGAT CGTGGCCTTA
GACAAGCCCT TTGAACAGGC GACTCCTTTG CTGCCTGGAA CGTTTTTATC AGCTGAAATT
ACAGGTAAAA CACTGAGTAA CGTGTTGAAG TTGCCTGCTT CTGCGGTCTC TCAAAATGGA
CAAGTCTGGT TTGTAAATGA GCAAAATATT TTAGTTAATG TGATGGCTGA TAAAGTCTTC
GAGCGGGGTG AATACGTCTA CATCAAGCCT ATTGATGGCG TTAGCGAAGC CAAGGTGGTG
ACTCGCCCGT TGGTAAGCTA TCTAGCCGGC ATGCAGGTCA CGCCTTTGGT TGAGCCTTCA
GCGGCGGAGA AGCCTTTAGC GGCAGAAAGC AAGCAATCAG CGACGGAGAA GCCTTTAGTG
GTAGATAAGC CCTCAGCGAT GAACAAGGAG CAGACGTTAT GA
|
|---|
| Protein sequence | MKVSPTPILV TVVAVVCIGL AIMYNGYKMA ESANAPRPAE TKVSAPNVSV VLATPGHYQA
YVTGHGEAQA HWALTLKAQV QGEVIDMSSQ FATGNIVEKG TVLATLDSTQ YAQALASAKA
TLAEAELALQ EEKDLGTQAK REWQRSGVTQ APSSPLVYRT LQLEAAQANA DNALFALKTA
QRDERNTHIS AAFDGVILSR DIDLGSYVNI GDTIATLNST DKVEIAVPLS LAQWQNLGGE
LAAPVFLQDV TTGTRWTGYI ARFEQHLDAN SRQRNVIVAL DKPFEQATPL LPGTFLSAEI
TGKTLSNVLK LPASAVSQNG QVWFVNEQNI LVNVMADKVF ERGEYVYIKP IDGVSEAKVV
TRPLVSYLAG MQVTPLVEPS AAEKPLAAES KQSATEKPLV VDKPSAMNKE QTL
|
|---|
| |