| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3546 |
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| Symbol | |
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| ID | 4175325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4262437 |
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| End bp | 4263993 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638056575 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_663102 |
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| Protein GI | 109899847 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAGAGA TTGAACATTA CATCGGAAGA CCTAATCTGG CTGCAGAAGA TTCAGAATGG
CAGCTGAATT TAGATCCCTC CTTACTGGTC AACCTCAATA ATATCTGCGA ACTTGTTTTG
CTAACGCTCG AGCCACTTTA CTGCAGATTG GCATGTCACT ATCAAAATAT CGCTATCCCC
GTCGCCCACA GCGGAAATGC CACAGCGCAA ATGCTCGCAG ATACCCATTC TTTTCGACAG
TCGTTGTATT ATCGAGATCA GGTAAACACC ACAGAGTTAA CAGACGCGAA CTGGGTTTGC
ATTGACGACG ATTATCATCG CGTAAGTATG CCAATCGTTC TTGGTGACGC CGCTGATGGC
AAGGTACCCT TTGGTTATTT AGAGTTATAT TACAGTCAAA AACGTGAATT TTTGCCCAAG
GATATATCTA CCTTAAATGT GTTAGTACGC GGCATTACTA GCCATCTTGA GCAGCACAAA
CATATTATCG AATCTCACCA AGCACGCGAA CTTGACCAGC TTGTCTCTGA ATATAATAAG
GATTGGATCT ACGTTAAAGA CGCCAAATTT AGGTTCATTT ACGCCAATCA AGCGTTCATG
TCACTTTTCC CTAAAGATAG ACAGCATGAG GTTATTGGCA ATACCAATGT CAAAGAGCCT
AGTGGCCAAG AGGCTAAGGA TATACTCAAC CAAGACAAAA AAGCGTTCAA AGATGGCCAG
TGTGTCAGTA TACAAGAGGC GTACTCATCA GCAGGTCAAA GGATGGTATA TGAAACGATA
AAAAGGCGAT TTTACAACGC CAGCGGAAAG CCGCATATTT TATGTATTTG CAGAGATATC
ACAGATCGCG AAAATCTGAT TCGGCAGTTG AAAAACGCTA ATGATGATTT AGATGATTTT
ACCCATATCG CTTCTCATGA CTTAAAAGCC CCTTTAAATG CCATACGTCG ACTCCTTGGT
TGGATTGAGG AAGATTGCCA CAATATTCTG CCAACGGAAT CGCAAGAGAA TCTTCGCTTA
GTTGTCAATC GTGCCAATAG GATGTATCAG CTTTTAGACG ACTTACTTTC ATTTGCCAAA
ATTGGTCGTA AAGATACAAC CACAAAGCGC ATTGTGTTGG AAACTCTGGT AGCAGATTTA
ACGCCACTCT TAGACGCCCC AGAAGAGTTT ACTATCAATG TTGAGCCTGC AGAGCTAACG
GTCGCCCCCG TTCCGTTTAA AACGATCATG CTAAATTTAT TGGGAAATGC AGTTAAGCAC
AACGATAAAT CAAGCCCACA AATCAATGTT AGCTTTCGCG AAATGCAACA TTTTTACGTC
GTAGGTATTG AAGATAATGG CCCAGGTATA GATCCAAAAC ACTTTGAGCG TATCTTTCAA
CTTTTTCAAA CGTTGAAATC CAGAGATGAA GTAGAAGGCA GTGGGATAGG ACTCTCTGTT
GTGCTCAAGC ACCTGAACCA GTACGGTGGC AAAATAGAAG TTGACTCTGA TGGCGAAAAT
GGAACTACAT TTACTGTGTA TTGGCCAAAA CCTAAACATG GAGTAGAGCA GGGATGA
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| Protein sequence | MLEIEHYIGR PNLAAEDSEW QLNLDPSLLV NLNNICELVL LTLEPLYCRL ACHYQNIAIP
VAHSGNATAQ MLADTHSFRQ SLYYRDQVNT TELTDANWVC IDDDYHRVSM PIVLGDAADG
KVPFGYLELY YSQKREFLPK DISTLNVLVR GITSHLEQHK HIIESHQARE LDQLVSEYNK
DWIYVKDAKF RFIYANQAFM SLFPKDRQHE VIGNTNVKEP SGQEAKDILN QDKKAFKDGQ
CVSIQEAYSS AGQRMVYETI KRRFYNASGK PHILCICRDI TDRENLIRQL KNANDDLDDF
THIASHDLKA PLNAIRRLLG WIEEDCHNIL PTESQENLRL VVNRANRMYQ LLDDLLSFAK
IGRKDTTTKR IVLETLVADL TPLLDAPEEF TINVEPAELT VAPVPFKTIM LNLLGNAVKH
NDKSSPQINV SFREMQHFYV VGIEDNGPGI DPKHFERIFQ LFQTLKSRDE VEGSGIGLSV
VLKHLNQYGG KIEVDSDGEN GTTFTVYWPK PKHGVEQG
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