| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3484 |
|---|
| Symbol | |
|---|
| ID | 4175263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4183291 |
|---|
| End bp | 4184157 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638056513 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_663040 |
|---|
| Protein GI | 109899785 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0697] Permeases of the drug/metabolite transporter (DMT) superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.590358 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACCCGG TTAAAAAGAG CCTGTGGTCT CTACACCTCA CTGTTATCTT GTTGGGGGCA
ACGGCACTTT TCTCAAAAGT GATCCCCCTG TCAGCGACTG ATATCACCTT CGGTCGCTCC
ATAATTGCTT GCGTCGTGTT ATTTTCGTTA GTCAAAATGA CTGGCGGTAA GCTGTCCCTT
GCCCGTAAAA AAGATTACTT CATCGGCATT GGTTTGGGGA TTTTGATGGC TGCCCATTGG
GTTAGCTATT TTGCTGCTAT GCAGTATTCG AGTGTGTCTG TTGGCATGAT AGCCTTATTC
ACGTTCCCTG TTATAACGGT TTTAATTGAG CCCTTCTTCG AGGGTATTCG CTTAGTTTGG
CAAGATATAT TAAGCGCGCT AGTGGTGTTT ATTGGCATAT TTTTGATTGT GCCTGAGGTG
TCTTTAGAGA ACGATGTCAC GTTAGGTATT TTGGTTGGTA TCTTGTCAGC CGTGCTGTAT
GCCTTTCGCA ATTTATGTCA CAGGAAATAC TTTTCTCACT ACAGTGGTTC GCTGGCTATG
GCGTACCAAA CCTTAGTGAT CTTCTTTTGT CTAAGCTTTT TTATTACTCC AGAATTGTTA
AACGCGAGCG GCCAAACGTA TATTTATTTG GCATTGTTAG GTACGTTTTT TACTGCTGTG
CCTCACGCAC TAATTGCCAC CAGCTTACAG CATTTACGCG CAAAGACCTT CTCATTGGTC
GCGTGTATGC AGCCCCTGTA CGGCGTTATC TTGGCCATAT TAGTGCTCGA CGAGCAACCC
AACTGGCAAA CTTATGTGGG CGGATTATTG GTGATATCTG CTGCTTTGTA CGAAACTGTT
AACACTCAGA AATTACACAA GAAATAG
|
|---|
| Protein sequence | MDPVKKSLWS LHLTVILLGA TALFSKVIPL SATDITFGRS IIACVVLFSL VKMTGGKLSL
ARKKDYFIGI GLGILMAAHW VSYFAAMQYS SVSVGMIALF TFPVITVLIE PFFEGIRLVW
QDILSALVVF IGIFLIVPEV SLENDVTLGI LVGILSAVLY AFRNLCHRKY FSHYSGSLAM
AYQTLVIFFC LSFFITPELL NASGQTYIYL ALLGTFFTAV PHALIATSLQ HLRAKTFSLV
ACMQPLYGVI LAILVLDEQP NWQTYVGGLL VISAALYETV NTQKLHKK
|
|---|
| |