| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3475 |
|---|
| Symbol | |
|---|
| ID | 4175252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4172076 |
|---|
| End bp | 4173665 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638056502 |
|---|
| Product | anaerobic nitric oxide reductase transcription regulator |
|---|
| Protein accession | YP_663031 |
|---|
| Protein GI | 109899776 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.232815 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGAAC TTAATTCAAC GCTTCTGTTA GAAGTGGCAT TAGATCTCGC CAACAGCATC
ACCAATGAAG ATAGGTTCGA CAGATTGCTA TCCTCGATTA GAAAAGCAAT TAATTGCGAT
GCAGTTGTAT TGTTGGTCTA CCAAGGCGAA CAACTTAAAC CATTGGCAAT ACAAGGGCTG
GCAACCGATA CTCTTGGGCG GCGTTTTAAC CTCAGCGATC ACCCTCGCCT TTCGCTCATT
TGCTCAGGAA GTCAGCCGGT GCGCTTTGCA TCAGATTCCC CATTACCTGA TCCTTACGAT
GGCTTGTTGC TCGCAAAAGA AGGCGACTTA CCCGTGCATT CGTGTATGGG TTTGCCCTTG
TATAGCGACA ATCAACTGAT GGGCGTCGTG ACCCTTGATA GTCTCAGCCC TGAAGCCTTT
TCAGAAATCC CCGAGCGAAC ATTGCAGCTA ATCACTGCGC TGTCAGCCGC CACATTGAAA
ACGGCTATGC AACTGAGTGG GTTGGAACAG CGCGCACAAC AAGCACACGA TTTAGTGCAA
GAACTTACGA ACGAAGCACT AACACGAGAT GGTGGCGAGT TAATCGGCAA TAGTCCTAGT
ATGCTCGCCC TTAAAAGTGA TATTCAGTTG GTCGCGGGCT CTGACTACAC TGTGCTGATA
TTGGGCAAAA CAGGCGTGGG TAAAGAATTG GTTGCCCGAA CATTGCATCA ACGTTCTAAT
CGAGGGACCC AGCCTTTGGT GCACGTTAAC TGTGCCTCGA TTCCGGAAAC CTTGGCGGAA
AGTGAATTGT TTGGTCACGG AAAAGGTGCG TTCAGCGGCG CCGAAAAAGA GCGCGCCGGC
AAATTCCAAT TAGCCGATGG AGGCACGATA TTTTTAGATG AAATTGGTGA ATTGCCCTTA
AGCGTGCAAA GTAAATTATT ACGCGTGTTG CAAAGTGGCG AGATTCAGCC TGTAGGAAAG
GATCAAGTAT CAACAGTCAA CGTACGCGTA GTAGCCGCGA CTAACCGAGA CTTAGCACAA
GAAGTTAAAA CTGGGCGTTT TAGAGCTGAT CTTTATCATC GCCTCTCCGT GTACCCTATC
AACGTGCCGG AACTAAAAGA GCGCGGAGAT GACGTATTGT TACTCGCAGG TTATTTCTTA
GAAGTGACCG CTCGCAAGCT AGGTATTCGC CAACTAAAAA TCCCAAACGA CGTACAACAG
GCCCTAATTG CCTATTCTTG GCCTGGCAAT GTAAGGGAAT TAGAACACGT CATCAGTCGT
GCCTCTTTGA AGGCAACGCG CAGTAAGAAT CAACACAACA TTATCTCACT TAGCACAGAA
GATTTAGACT TTGAGCGTGG AATGCCGTCA AAGATCAACC TGAATCAACC AATCCAAGTG
AGGGAAGTAT TAGGCAGTAG CGAAGCACAG AGTCTTAAAA CAATGACGGA AGCTTTTCAA
GCTCAGATGA TCAGCCGCAC TTTGAGTGAG CATCAAGGCA ATTGGACGTT GGCCGCTAAA
CAATTAGAGA TGGACAGGGC CAACCTTGCA CGATTGGCAA AGCGGCTCGG CGTACACGTA
CAGAAAAACG TGAACAATCA AGCATTTTGA
|
|---|
| Protein sequence | MMELNSTLLL EVALDLANSI TNEDRFDRLL SSIRKAINCD AVVLLVYQGE QLKPLAIQGL
ATDTLGRRFN LSDHPRLSLI CSGSQPVRFA SDSPLPDPYD GLLLAKEGDL PVHSCMGLPL
YSDNQLMGVV TLDSLSPEAF SEIPERTLQL ITALSAATLK TAMQLSGLEQ RAQQAHDLVQ
ELTNEALTRD GGELIGNSPS MLALKSDIQL VAGSDYTVLI LGKTGVGKEL VARTLHQRSN
RGTQPLVHVN CASIPETLAE SELFGHGKGA FSGAEKERAG KFQLADGGTI FLDEIGELPL
SVQSKLLRVL QSGEIQPVGK DQVSTVNVRV VAATNRDLAQ EVKTGRFRAD LYHRLSVYPI
NVPELKERGD DVLLLAGYFL EVTARKLGIR QLKIPNDVQQ ALIAYSWPGN VRELEHVISR
ASLKATRSKN QHNIISLSTE DLDFERGMPS KINLNQPIQV REVLGSSEAQ SLKTMTEAFQ
AQMISRTLSE HQGNWTLAAK QLEMDRANLA RLAKRLGVHV QKNVNNQAF
|
|---|
| |