| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3471 |
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| Symbol | |
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| ID | 4175248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4165924 |
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| End bp | 4168290 |
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| Gene Length | 2367 bp |
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| Protein Length | 788 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056498 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_663027 |
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| Protein GI | 109899772 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.104245 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCAAA GCGCAGAGAA TGGAATTGAA ACTATCGAAG TCACAGCGAC ACGCCGCGCT
GGTTCATTGC AGGAAGCACC GTTGAACATT ACCGCCCTGA CTTCTGATAC CTTGGCTGAG
CAAAATATCG CCGACTTAGA CGATGTAGCC CGCTGGGTTC CGGGTTTAAC CATTACTGAT
CAGGGCGGGC GTAATGACTC TCCTATTATC GTACGTGGGT TAAATACCAA CTCTTCAGGC
CCAAGTTCAG ACGGCGGCAC CGTATCAACT TATGTGGGTG AAATTCCCCT ATTCATTAAT
ATGCGCTTGA ACGATATTCA GCGCGTTGAA GTATTAATCG GTCCACAAGG TACCCTCTAC
GGCGCCGGCA CCCTAGGCGG AGCCATTCGT TATTTGCCTA ATAAGGTAGA GTTAGATGTC
ACCTCTGGTG AAGTCACAGG CAATGTGTTT AGCGTAAATG AGAGCGATAG TGTCGGTGCA
GAGGGGGGCT TTGTTTTCAA TACCCCTTTG ATTGAAGACG TGCTTGGCGT GCGTATGTCG
CTAAACAAAT TCCATGATCC CGGTTTTGTT GATTATAACT ACCTAGTGCG TGAAGGTGGG
GTTTCCATTG CTGATCCTGA TTGGACAGAT GCAAGGGATG TTGACAGTAA CCTGCGCTCG
AAAAAAGATG CTAACGGCGA AGATACCCTT TCAGGCCGCG TTGCCCTGCG CTGGACACCC
ACCGAAAACA TTGACGCCAC ACTGACTTAT ATGTATCAAA AGCAAGAAGT GGAAGGGCGC
TCTATTGTTC ATTACAACGG ATTATCGCCA GATAATGGTT TGAATGACAT CATCGGAAAG
TACGAATCAG CTTATCGCTA CGAAGAGCCC CGTGAAAAAG AAGACGACTT GCTCAGTTTA
GAGCTCTCCG TTGATTTGGG GTTTGCTGAG TTGGTCTCCG CAACAGGCAA ATCCACGTTC
GAAGCGGTTG GTCAGCGAGA TCAAACCGAT TTATTGATCC GCCTTGCCTA TAGCTACGAA
GAGTTTCCTG CGTTTTCGAG TTACACCAGA GAAGAAGACA ATCGAGATAT CTTCACTCAA
GAGCTACGTT TGGTATCTAA AAATGATTCT GACCTAAGTT GGATCGCGGG TGTTTTTTAT
AACAAGATTG AAAGCGACGG CAGAAGCTTA GAGTTCACGC CGAACTTCGA TGAATATGCG
ATAGAGACGT GGGAAACAGG AGGCAATTTA CGTACTGATG ATCTCGAATA CATATCGTTT
GATGAAACAG AAGTAACTGA AAAAGCCCTG TATGGGGAAG TAAGTTATGC GGTCACTGAG
CAATTAGATA TCACCTTAGG GGCTCGTTTT TATCAATACG ATTTAGAAAC CGCATCTGAC
GTTGATTTAC CTTTGTTGTA TACCTCTATT TCGGTTGAAG AAGGTGCTGA AGACTTTAGG
CAAGGAGATG AAATTATCTT GATCCCCCTT GAAAATGAAG CCGACGACAG TGGGAGTTTG
TTTAAGTTTA ACGCCAGTTA TCAAATTACG ACTGATGTGA TGGGGTATGT CACGGTCAGC
GAAGGCTTTC GTATTGGTGG CTCAAATGGT GTGGGGGCTT GTCCTCCCGA CTTATCAGGG
GATACACAAG AAGTCTGCGC TTTACCCGAT GAGCAAATTT ACGCACCTGA TACCACAACC
AATTACGAAC TTGGCTTGAA AAGCACATGG CTAAAAAACA GATTCCATTT CAATATGGCC
TTGTTCAACG TGGATTGGGA TGACGCTCAA GTCACGGGCA CCACGGAAAA TGGTCAGCAG
ACTATTTTGG TTAATGCCGG CAAAGCTAAT TCAAAAGGCG TTGAGATGAT GTCACGCGCA
ATTTTTAGCG ATGAATTCAG TGCCTATGCC ACTTATGCTT ACACCAAAGC TGAATTGACC
GAAGATGTAG CTCAGTTGTT CGATGACTCT GATGGCCTTG ACGGCGATCG CCTACCAGGT
TCGCCGGAGC ACCAGTTCTC CCTTGGAGTT AAATACTCTA CAGAAGTGTT TGGCGATAAA
TTATTAGATG TGACCTACGG CCTAACGGCG CAAAGCGATA TTTACTCTAA AATAGGCCTG
CACGAATCTG GCGAAATTAT TTCAGGATAT GCGCTAAGTA ATTTAAGCGC GTCTTTGTCT
GACGAAGATT GGTCGGTCAC CCTTTACGTG GACAACCTCT TTGACAAATA CGCCGTGAGC
TCATCACGAA ATGATTTGGG TGATATTGGT TTGGCGGTAG CCCCTGATAC TAACTCGAAC
CGAGGTGATA TATTGCGTTA CTATGGTCAT TACTTAGAGA GACCGCGCAC AGTTGGGCTT
AAATTTAATT ACCAATTTGA GATGTAG
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| Protein sequence | MAQSAENGIE TIEVTATRRA GSLQEAPLNI TALTSDTLAE QNIADLDDVA RWVPGLTITD
QGGRNDSPII VRGLNTNSSG PSSDGGTVST YVGEIPLFIN MRLNDIQRVE VLIGPQGTLY
GAGTLGGAIR YLPNKVELDV TSGEVTGNVF SVNESDSVGA EGGFVFNTPL IEDVLGVRMS
LNKFHDPGFV DYNYLVREGG VSIADPDWTD ARDVDSNLRS KKDANGEDTL SGRVALRWTP
TENIDATLTY MYQKQEVEGR SIVHYNGLSP DNGLNDIIGK YESAYRYEEP REKEDDLLSL
ELSVDLGFAE LVSATGKSTF EAVGQRDQTD LLIRLAYSYE EFPAFSSYTR EEDNRDIFTQ
ELRLVSKNDS DLSWIAGVFY NKIESDGRSL EFTPNFDEYA IETWETGGNL RTDDLEYISF
DETEVTEKAL YGEVSYAVTE QLDITLGARF YQYDLETASD VDLPLLYTSI SVEEGAEDFR
QGDEIILIPL ENEADDSGSL FKFNASYQIT TDVMGYVTVS EGFRIGGSNG VGACPPDLSG
DTQEVCALPD EQIYAPDTTT NYELGLKSTW LKNRFHFNMA LFNVDWDDAQ VTGTTENGQQ
TILVNAGKAN SKGVEMMSRA IFSDEFSAYA TYAYTKAELT EDVAQLFDDS DGLDGDRLPG
SPEHQFSLGV KYSTEVFGDK LLDVTYGLTA QSDIYSKIGL HESGEIISGY ALSNLSASLS
DEDWSVTLYV DNLFDKYAVS SSRNDLGDIG LAVAPDTNSN RGDILRYYGH YLERPRTVGL
KFNYQFEM
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