| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3442 |
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| Symbol | |
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| ID | 4175219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4130693 |
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| End bp | 4132144 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638056473 |
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| Product | exonuclease subunit SbcD |
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| Protein accession | YP_663002 |
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| Protein GI | 109899747 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0420] DNA repair exonuclease |
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| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.289654 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTATCAGT GGGCGGTATC AGTAAACTGC TGCAGTAATC TGACGCGCTG CAATTTGTCA
TTCGTAAAAA CACAAAGGAC TTGGCATATC AAAATTCTAC ACACCTCTGA TTGGCACCTA
GGGCAAAACT TTTTCACTAA AAGCCGCAAA GACGAACATC AAGCCTTTTT AAACTGGTTA
CTTAACGTGC TCCAAGTACA AAAAATTAAT GCTGTTATTG TCGCGGGGGA TATTTTTGAT
ACCGGCACGC CGCCAAGCTA TGCCCGTCAA ATGTACAATC AGTTTGTGGT TGAACTAAGC
AAGCTCAGCT GCACCTTAGT GGTATTAGGG GGCAATCACG ATTCTGTATC AACCCTAAAT
GAATCTAAGC AGTTACTCGC CTGCCTGCAC ACCCATGTTA TAGCCAACAC CATGGATAAC
GTGGAGCAAC AAGTTATCGA ACTAACTGAC GCTACAGGCC GTGTCGGCGC TATATTGTGC
GCTATTCCGT TTATTCGCCC TCGTGACGTG CTACAAAGCC GAGCAGGTGA AACCAGCGAA
GACAAAAAGC TTGCCCTAAG CGACGCCATA AAAGCCCATT ACGCCAGCAT TTTTCAGCTT
GCCGTTGAAC GTCGTAATCA ACTTGCCGAT AACGGCAATG GCAATGCAGC TCAAGGTATT
CGCAACGTCA GCAGCACGAG CGTCCATATT CCTATTATTG CCACTGGGCA TTTAACGGCA
TTAGGGGTAA GTCAATCGGA ATCCGTACGA GAGATTTACA TCGGCACATT AGACGGCTTT
GCGGCTGATG GTTTCCCCCC AGCGGATTAT ATTGCTCTTG GCCATATTCA CCGACCGCAA
ATGGTCGCTA AATCTGAGCA CATCCGTTAC AGCGGCTCGC CTATACCCCT GAGTTTTGAC
GAGCTTAAAT CACAGAAACA AGTGGTGATC GTAGCGTTTG ACCAGCAAGG TCAGCGCAGT
ATCGCCCCGT TGGATATTCC GATGTTTCAA CCTATGGCCA TGCTCAAAGG GGATTTGGAG
AGCATAAAAA CGCAACTGAC AGCGTTTCCC CTTCTCACGG AAAAAACTAG CACTGAAGCA
ACTCGCACTG AGGATGACGG CCAAGCTAAC AATCTCAGCA AACCGCAAGT ACTCACCTCA
GTAAAGCCCA CTTGGCTGTG CATTCATGTT GACGTGCAAG ACTACTTAAG CGATTTACAG
CAAAGCATTC AAACCTTGAC CGAGGGGCGC AATGTGGAAG TGCTGCAATT ACGTCGCACC
CGCACCAAAG CAAGCCAAGG GTTAAACCAA GTTAACAACG AAACACTGGC AGAGCTAACC
CCCTTCGATG TGTTTGAAAA GCGCCTCGCC CTTGAACATT TTGAAGGAGA GCAAGACCAA
ACTCGCTTAA CGAAAATTCG CCATACCTTT AGTGAAATAG TGGAAGAAGT GCGCCATCAG
GAGGCTAAAT AA
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| Protein sequence | MYQWAVSVNC CSNLTRCNLS FVKTQRTWHI KILHTSDWHL GQNFFTKSRK DEHQAFLNWL
LNVLQVQKIN AVIVAGDIFD TGTPPSYARQ MYNQFVVELS KLSCTLVVLG GNHDSVSTLN
ESKQLLACLH THVIANTMDN VEQQVIELTD ATGRVGAILC AIPFIRPRDV LQSRAGETSE
DKKLALSDAI KAHYASIFQL AVERRNQLAD NGNGNAAQGI RNVSSTSVHI PIIATGHLTA
LGVSQSESVR EIYIGTLDGF AADGFPPADY IALGHIHRPQ MVAKSEHIRY SGSPIPLSFD
ELKSQKQVVI VAFDQQGQRS IAPLDIPMFQ PMAMLKGDLE SIKTQLTAFP LLTEKTSTEA
TRTEDDGQAN NLSKPQVLTS VKPTWLCIHV DVQDYLSDLQ QSIQTLTEGR NVEVLQLRRT
RTKASQGLNQ VNNETLAELT PFDVFEKRLA LEHFEGEQDQ TRLTKIRHTF SEIVEEVRHQ
EAK
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