| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3343 |
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| Symbol | |
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| ID | 4175120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4008290 |
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| End bp | 4009495 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056374 |
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| Product | type II secretion system protein |
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| Protein accession | YP_662903 |
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| Protein GI | 109899648 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.505202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAAAG CCACCACTAC CTTTGTATGG AGCGGAGCCA ACCGTAAAGG TCAAACTGTG
AAAGGGGAGA TCAGTGCGTT ATCGGTATTA GAAGCAAAAA ACCTGTTACG TCGCCAAGGC
GTATCGGCTA AGAAAGTCAA AAAGCTCTCA AAGCCTTTCT TCGGTGCTCA GAAAATCAAA
CCCGTGGACA TCAGTATTAT CTCTCGGCAA ATCGCGACGA TGTTAAGCGC TGGGGTCACC
TTAATTCAAA CCATAGATAT GATAGCGGGT GGGCATAACA ACCCGAATAT GCGCAAAATG
CTGGGGGAAA TAGGCGGCGA AGTAAAAGCG GGTAATCCTT TTTCAAGTGC GCTGCGCAAA
CATCCAGAGC AATTTGATGA TTTGTATTGC GATTTAGTGT CGACCGGAGA GCAATCGGGT
GCCCTTGAAA CCATTTACGA CAGGATCGCC ACGTACAAAG AAAAGGCTGA AGCGTTAAAA
TCAAAAATTA AAAAAGCCAT GTTTTATCCG GTGGCCGTTA TTGTAGTGGC CTTTATTGTC
ACCACCATAT TGCTCATATT CGTGGTACCG CAATTTGAAG AAATTTTCAG TAGCTTTGGT
GCTGAGTTGC CGGCATTTAC TCAGTTTGTG TTGGCTATTT CCCGCTTTTT GCAAGACTAC
GGTCTGTTCG TGGGGGCGGG CTTAGTGGTA GCGAGTATTG TATTCAGTAA GACTTATAAA
AAATCAAAAC GATTACGAGA CAGTCTAGAT GGCAAAATGC TTAAAATCCC TGTGATTGGA
GAAATATTAA AAAAAGCCGC GGTGGCGCGC TTTAGTCGCA CCTTAGCCAC GACTTTTGCT
GCGGGCGTTC CGTTAATCGG TGCCCTTGAT TCTGCCGCAG GAGCGTCGGG TAATGCGGTG
TTTCGGGATG CTATTTTATT CGTTAAAAAA GAAGTCGCTG GCGGTACGCA AATGAACACG
GCCATGCGCG CCACGGCTGT ATTTCCTGAT ATGGTGACAC AAATGGTTGC TATTGGTGAA
GAGGCCGGCG CAGTAGATGA TATGCTGAGT AAAATCGCGA CGATATACGA AGCAGAAGTC
GACGATATGG TGGATGGTCT AACCAGCTTA CTAGAGCCTA TGATAATGGC CGTGCTTGGG
GTGGTGATTG GTGGTTTGAT TGTTGCCATG TATTTACCGA TATTCGAAAT GGGTAATGTT
GTTTAA
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| Protein sequence | MPKATTTFVW SGANRKGQTV KGEISALSVL EAKNLLRRQG VSAKKVKKLS KPFFGAQKIK
PVDISIISRQ IATMLSAGVT LIQTIDMIAG GHNNPNMRKM LGEIGGEVKA GNPFSSALRK
HPEQFDDLYC DLVSTGEQSG ALETIYDRIA TYKEKAEALK SKIKKAMFYP VAVIVVAFIV
TTILLIFVVP QFEEIFSSFG AELPAFTQFV LAISRFLQDY GLFVGAGLVV ASIVFSKTYK
KSKRLRDSLD GKMLKIPVIG EILKKAAVAR FSRTLATTFA AGVPLIGALD SAAGASGNAV
FRDAILFVKK EVAGGTQMNT AMRATAVFPD MVTQMVAIGE EAGAVDDMLS KIATIYEAEV
DDMVDGLTSL LEPMIMAVLG VVIGGLIVAM YLPIFEMGNV V
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