| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3308 |
|---|
| Symbol | |
|---|
| ID | 4175085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3970549 |
|---|
| End bp | 3970992 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638056339 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_662868 |
|---|
| Protein GI | 109899613 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTG CAAACATGAC GGGTCTTGAA ATGATGCAGG CCGTTGCCAG GGGCGATTTG
CCGCATCCCA ATATGGCGAG CACTATCCCA ATGAAATTTA TTTCGGTGGA AAAGGGCGTG
GCCATTTTTG AGGCTACCGC CGATGATAGA CATATTAATC CATTAGGTGG CGTTCATGGC
GGCTTCGCTG CGACAGTAAT GGATTCGGTT ACCGGATGTG CCGTGCATAG TATGTTGGAC
GTGGGCGTCG GTTACGGGAC AATTGATTTG AATGTGAAAA TGCTCAAGGC CGTGCCTAAA
GACACACCGT TAAAAGCAGA AGGCAGGGTC ATCAGTATGT CAAATTCACT CGGCGTATCA
CAAGGTAAGC TAATTGATGA ATCGGGGAAA GTTTATGCTT ATGCGTCCGC GACTTGTATG
ATTATGCGAC CTAGGGCGTC CTAG
|
|---|
| Protein sequence | MNIANMTGLE MMQAVARGDL PHPNMASTIP MKFISVEKGV AIFEATADDR HINPLGGVHG
GFAATVMDSV TGCAVHSMLD VGVGYGTIDL NVKMLKAVPK DTPLKAEGRV ISMSNSLGVS
QGKLIDESGK VYAYASATCM IMRPRAS
|
|---|
| |