| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3296 |
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| Symbol | |
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| ID | 4175073 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3954990 |
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| End bp | 3957008 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056327 |
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| Product | periplasmic sensor signal transduction histidine kinase |
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| Protein accession | YP_662856 |
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| Protein GI | 109899601 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR02916] putative PEP-CTERM system histidine kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.593293 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAGCAG TTTGGGGATA TGCAGCCAGT GCTTTGGGTT ACGCACTGTT GCTGCTGTTA
TTGTTAACAT CGCGCAAGTC GGGCTTAGCT AAATATTTAT TAATATTGGC CACAGCTGCT
ACGTGTGTGT GGTCCCTTTC ACCTTTTTTC ATTGGCGAAT TGACCGTAGA GCGTCTCATC
GTTTTTGATA ACGTCAAACA ATTGTTCTGG CTGCTATTTC TGGCGGCGTG TTTAAAAGAT
AACTTTACCA GCTTGGTGGG CGTGCTTAAG CGCCCTGAAA CATGGTTAAT TCTGGCGTTG
CCAATTACTG GCATAATTAT TCCTCTGTTT CTAGATGTTA ACGACAGTTG GTTGTTTTTA
CTGCAAACCA TTCTGGCACT ACAAGTGTTG GTTTTATTAG AGATTATCTA CCGCCAATCA
GGTGAAAACC GTTGGGCGTT TAAACCGCTA ATTTTATACT TAGGCGCCAC AAACCTGTTT
GAATTTGTCA CCTTCGCCAA CGCGCTTATG GTCGAGCAAA TCGACTTGAC GTATATCGCC
GCCAGAGGCT TTATTTACAC CGCTATGATC CCGCTACTGG TGCTTGCCAT ACGCCGTGTA
CAGCATTGGG GCGTTGACAT ATTTGTTAGT CGTGAGGTGG TGTTGCACAG CTCTTTGCTA
CTGGTGGCAG GGTGTTATTT GTTTGTCATG TCGCTTATCG GCTATGTGGT GAAATACTAC
GGGGGAGAGT GGAGTACTTC AATCCAAGTC GCGCTAATAT TCCTGTCGTT GGCGTTGCTT
GCCACGGTAT TTTTGTCAAC GAGCTTTCGC ACCAAGGTCA AAGTGTTTAT TACTAAACAC
TTTTTTGCCA ATCAGTTTGA CTATCGTTAT GAGTGGGTCA AGTTAACCAA ATCGTTAGAA
AGTAATCAGT CTGGGCAGGC TGTTTATCAA ACTGTGCTAA ACGCTTTTTT GCAGGCGATG
GATTACCAAT CTGGCTTGCT ACTTAAGCGA GTCGATAGCA AAGTAGAATA CCTAGCAGAT
GTAGACGCTG AACCTTTATG CGAAGAGCAG CTCGAAGTGA TGAGGCAATT TTTTGCGTTT
TTTGAGCAGA AAAACTGGAT CATCGATATG GCGGAGCTGC GCACCAAGCC CTATGTGTAC
GAGGGCTTAA AAGTGAATCA CGGGACCTTG AATAAAATTG CATTCCAATT GGTTATCCCT
ATCTATCGAG GCGATACGCT GTGGGGGTTA GTGTTGATGG GCAACACCAA TGACACATCG
CGCAGTTTAA ATTGGGAATT ACGTGACTAC CTTACTGCGG TGACCGCGCA AATCACTAAC
TTTTTATTTC ATCATGAGGC CGCAAAAGAA GTGGCTGAAA ATGCTCAGTT CGCTGCATTC
ACCCGTATGT CGGCTTTCGT GTTGCACGAT TTGAAAAATG TTTTGGCACA AATTGACTTA
ATTTTGTGTA ATGCTGAGCA GCATAAGGAT AACCCCGAAT TTATCGAGGA TACCTTTGAA
ACGCTGCATC ACACCAAGGC TCGTATGGAT AAAATGTTAC GCCAGTTGTC AGAGAAGAAT
GCAGAGCCAG CGAGTCAGCA CAGGTTAGTC AATTTGTCGG GGTGTATCGA AAACGTCATT
GAACAGCGCT GTGCAACATA CTTGCCCAAG CCAGAATTGA GGATCGATAG TGAAATAGAT
GTTGTGCTTG ACCAAGAAAA GTTCGCCAAT GTGATGTATC ACTTGATCAG CAACGCGCAA
CAAGCCACCG CCGACGATGG TTTTGTGCGT GTAGATGTCT GCCATGCCCC ACAAAACGAA
AACATGGTGG TGACTATTTC TGATAATGGC TCGGGCATGA GCAAGAGTTT TATTCAGCAG
CGCTTATTTA CGCCTTTTGA TACCACTAAA GGCAATGCCG GTATGGGCAT AGGTGCTTAT
GATGCTAAAA CGTTTTTAGA GAAAATAGGT GGGTTTTTAC ATGTTCAAAG TGAAGAGAAT
GTTGGTACAG TCTTTACGTT GAACATACCA GCGAACTAA
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| Protein sequence | MLAVWGYAAS ALGYALLLLL LLTSRKSGLA KYLLILATAA TCVWSLSPFF IGELTVERLI
VFDNVKQLFW LLFLAACLKD NFTSLVGVLK RPETWLILAL PITGIIIPLF LDVNDSWLFL
LQTILALQVL VLLEIIYRQS GENRWAFKPL ILYLGATNLF EFVTFANALM VEQIDLTYIA
ARGFIYTAMI PLLVLAIRRV QHWGVDIFVS REVVLHSSLL LVAGCYLFVM SLIGYVVKYY
GGEWSTSIQV ALIFLSLALL ATVFLSTSFR TKVKVFITKH FFANQFDYRY EWVKLTKSLE
SNQSGQAVYQ TVLNAFLQAM DYQSGLLLKR VDSKVEYLAD VDAEPLCEEQ LEVMRQFFAF
FEQKNWIIDM AELRTKPYVY EGLKVNHGTL NKIAFQLVIP IYRGDTLWGL VLMGNTNDTS
RSLNWELRDY LTAVTAQITN FLFHHEAAKE VAENAQFAAF TRMSAFVLHD LKNVLAQIDL
ILCNAEQHKD NPEFIEDTFE TLHHTKARMD KMLRQLSEKN AEPASQHRLV NLSGCIENVI
EQRCATYLPK PELRIDSEID VVLDQEKFAN VMYHLISNAQ QATADDGFVR VDVCHAPQNE
NMVVTISDNG SGMSKSFIQQ RLFTPFDTTK GNAGMGIGAY DAKTFLEKIG GFLHVQSEEN
VGTVFTLNIP AN
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