| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3294 |
|---|
| Symbol | |
|---|
| ID | 4175071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3953164 |
|---|
| End bp | 3953541 |
|---|
| Gene Length | 378 bp |
|---|
| Protein Length | 125 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056325 |
|---|
| Product | LrgA |
|---|
| Protein accession | YP_662854 |
|---|
| Protein GI | 109899599 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1380] Putative effector of murein hydrolase LrgA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTGGC TCAAATACAC ATTAGCTTTG TTGTCGTTGG TTGGCTTATG GTTTGTAGGG
TTAGGCCTAA GCACATTTAT ACCCTTGCCT GCTTCTTTAT TAGGTTTGTT AGTATTGCTA
CTGGGTTTGA TGTGGCTTAA GCGCGTTCCT TCTGCTTTGC TCAAAGTGTC GCAGTTTGTG
CTTGGGCATA TGCTGGTGCT CTTTGTGCCA GCGACCATGG GGGTGCTACT TTACGCTGAA
AAGTTAGCGG ATAATCTATT GTGGCTAATA TTGAGTATTG TTGTCAGCAC CGTGCTCAGT
CTTGGAATAA CCGCATGGAT TTGCCAACGC TTATGGCAAT CGACCAACCA ACACCCGTCT
GCGCCTCATG AAGATTGA
|
|---|
| Protein sequence | MRWLKYTLAL LSLVGLWFVG LGLSTFIPLP ASLLGLLVLL LGLMWLKRVP SALLKVSQFV
LGHMLVLFVP ATMGVLLYAE KLADNLLWLI LSIVVSTVLS LGITAWICQR LWQSTNQHPS
APHED
|
|---|
| |