| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3284 |
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| Symbol | |
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| ID | 4175061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3943322 |
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| End bp | 3944560 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638056315 |
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| Product | ATP-dependent RNA helicase SrmB |
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| Protein accession | YP_662844 |
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| Protein GI | 109899589 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGAGC AATTAGAATT AGATGATGAA CTTTGCCGCG CAGTCGCCGA TTTAGGTTAC
AGCGAACCCA CCAGCATTCA ACAGTTGGTC ATTCCAGCGG CGATGGAAGG TAAAGACATA
CTCGCATCCG CCCCAACCGG CACAGGTAAA ACGGCGGCGT TTCTATTGCC CGTATGCCAA
TTCTTATTAG ATTACCCGCG CCGCCATCCT GGCTCGACCC GTATTTTGAT TTTAACCCCA
ACCCGAGAAT TAGCTCAGCA GGTTTATAAC CAAGCACTTG AGTTAAGTCG CTACACAGAC
ATAGTGTGCG GCGTGATCAC AGGTGGCATC AACTACGGCA CCGATCGCGA TACTTTTGAG
AAAAACCTCG ATATATTGGT GGCCACTCCA GGGCGCTTGT TCGAGCACAT CGAACAAGAA
AGCTTTGATT GTCGTGACAT CGAGTGCCTG ATTTTAGATG AAGCTGACCG TATGCTCGAC
ATGGGCTTCT CATCAATCGT TAATCAAATA TCGGCTGAAG CCCGCTGGCG CAAGCAAAGC
ATGTTGTTTT CTGCCACTCT AGAAGGCACT GGCATTAGTC GTTTCGCCAA AGACATACTC
AACGACCCCG TTGAGTTGGA GGCTGCATCT AGTCGTAAAG AGCAAGGTAA AATTCATCAA
TGGCTACATA TCGCCGATGA TGCAAAGCAT AAATATGCTC TGCTAAAACA TATTCTGACC
CATCAAGTGG AATCTGCCGT GGTGTTTGTG AAAACCCGCG ACCGCCTGAA TGAGTTAAAG
CAAATTCTGG AGCGCGACGG CTTTACCGTG TGCTGGCTAC AGGGCGAAAT GCCCCAAGAC
AAACGTAACT TGTCCATGGC AAAATTCCGC TCTGGTGAAG TCAAAATATT GATTGCCACC
GACGTTGCCG CCCGTGGTAT TGATGTTGAA AGCATCAGTC ATGTTATCAA CTATGATATG
CCGCGTACCG CAGACGTTTA TGTACACCGT ATCGGTCGAA CAGGTCGCGC TGGCAACAAG
GGTACGGCCA TTTCTTTGGT TGAAGCACAC GACATTGGCA TAGTGCCCAA AATCGAACGC
TACACCGAGC AGCCGCTTAA ACGCCGGGTA ATCGACGAAT TACGCCCGAA AAATAAAGAA
GCCAAGCCAC CAGCCAAAAG AAAGATCAGC AACAAAGCGA AAAAAGCCGC CGGTATACCG
CTGAAAAAGA AAGCCAAAAA GAAAAAGAAT CGCGGTTAA
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| Protein sequence | MFEQLELDDE LCRAVADLGY SEPTSIQQLV IPAAMEGKDI LASAPTGTGK TAAFLLPVCQ
FLLDYPRRHP GSTRILILTP TRELAQQVYN QALELSRYTD IVCGVITGGI NYGTDRDTFE
KNLDILVATP GRLFEHIEQE SFDCRDIECL ILDEADRMLD MGFSSIVNQI SAEARWRKQS
MLFSATLEGT GISRFAKDIL NDPVELEAAS SRKEQGKIHQ WLHIADDAKH KYALLKHILT
HQVESAVVFV KTRDRLNELK QILERDGFTV CWLQGEMPQD KRNLSMAKFR SGEVKILIAT
DVAARGIDVE SISHVINYDM PRTADVYVHR IGRTGRAGNK GTAISLVEAH DIGIVPKIER
YTEQPLKRRV IDELRPKNKE AKPPAKRKIS NKAKKAAGIP LKKKAKKKKN RG
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