| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3231 |
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| Symbol | |
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| ID | 4175008 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3879049 |
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| End bp | 3880239 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638056262 |
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| Product | type II secretion system protein |
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| Protein accession | YP_662791 |
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| Protein GI | 109899536 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0387255 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAATTTA ACTATTCTGG GTTAGAAATC GCGTCTAAGC AGCCAATCTC AGGCGAGATT
GACGCGGTAA GTCAGCAAGA CGCTGTGCGT AAACTCGCAG AACAACGCAT CGAGGTGTTT
TCCGTTGAAG CGGCGCAACC GCTGGTCAAA AGCAGTCGCC GGGTAAAAGT TACTGATCTA
GTCATACCGC TACAAGAGTT GGCCACGCTG ACTTCTTCTG GGGTGGCGTT AATCGATGCT
ATCAAAGCCC TTGGACAAAA TAAAGAACAC CCCAATTTGG CCAAAGGCTT TATGCTCATG
GCCAGTCGAA TAGAAGGCGG CGAAAGCTTA TCGGCGGCGC TCATGGCTTC TGGTTTACCT
TTTCCTCAAT ATGTTGCTCA TCTTGTTAGC GCAGGTGAAT TAGGCGGGCA GCTACCCATT
GCTCTCACAA ATGCATCTGA GCAATTGAAT TATGAGCAAG CGATTAAAAA CGACGTTCGC
GGTGCATTGA CGTACCCGTT AGTGCTTATT GGCTCAGGCC TTGCCGCCAT GCTGATTATC
TTTTTTGCTG TGGTACCTAA GTTTAGCCAT TTATTGGACG GTGAAAAAGA GCTCCCTGCG
CTGGCTTATT TAGTCTTAAC TGCCGGTCAA GCAGTAAATG ACTCACCCTA TACAGTGTTA
GCTTTTATCG TTGGCATCGT AATACTGATA GCGTCGATAT TCATGAACCC ATCGGTACAG
CGCTGGCTAA TGGACACCGC GCTAGAGCTG CCTGTGATTG GTCCATGGCT GGCAGAGCAA
GACGCGGCGC GCTGGGCGTC GTTGTGTGCT GCTATGCTAC AAGCGCGGGT GAATCTTGTG
GTGGCCCTAA GACTTGCGGC AGAAAGCTGT GACTTTACTC GGCGTAAAAG CCGTGCCTTG
GCCATGGTTA GTGATGTTGA ATCAGGGGTG GCATTTACGG ATGCTCTTGA GCGCTCTCGC
TTGGTGCCTT CAACTTCACT TAATCTAGTC TCAGTAGGGG ATAGAACGGG TCAATTAGGT
AAAATGCTAA CGGCGGTGGC GACACTACAT GATACCGCCT GTAAAAGACG TATGAAGCAA
GTGCTCACAC TGATGGAACC TATCGCTATT TTAATTGTCG GGGTCATTAT CGGTGTGATG
ATTTTAGGGA TTGTCTTAGC GATCACAGCG TCGACAGATA TTGATATATA A
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| Protein sequence | MKFNYSGLEI ASKQPISGEI DAVSQQDAVR KLAEQRIEVF SVEAAQPLVK SSRRVKVTDL
VIPLQELATL TSSGVALIDA IKALGQNKEH PNLAKGFMLM ASRIEGGESL SAALMASGLP
FPQYVAHLVS AGELGGQLPI ALTNASEQLN YEQAIKNDVR GALTYPLVLI GSGLAAMLII
FFAVVPKFSH LLDGEKELPA LAYLVLTAGQ AVNDSPYTVL AFIVGIVILI ASIFMNPSVQ
RWLMDTALEL PVIGPWLAEQ DAARWASLCA AMLQARVNLV VALRLAAESC DFTRRKSRAL
AMVSDVESGV AFTDALERSR LVPSTSLNLV SVGDRTGQLG KMLTAVATLH DTACKRRMKQ
VLTLMEPIAI LIVGVIIGVM ILGIVLAITA STDIDI
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