| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3128 |
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| Symbol | |
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| ID | 4174901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3769999 |
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| End bp | 3770997 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638056155 |
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| Product | type IV pilus biogenesis/stability protein PilW |
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| Protein accession | YP_662688 |
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| Protein GI | 109899433 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCCGA TGAATTTTTT CCGTGCAATG AGTGTCATTT TTATTCTCGC CTTGAGCGCT
TGTGCTAGCC AAAATGCTGG GACAGGCTCA GATGATTTCG ATAAGCAAAA GGCCGCAAAG
ACGCGCTTAT CTCTAGGGCT AACCTATCTA GAAAACGGTA ATTTCAGCCA AGCTAAATTT
AATCTGGATA AAGCACTGTC CTTTGCTCCA GAAATGGCAG ATGTGCATTA CGGTATGGCA
TATTATTTTC AGAACGTCGA AGAGTATGGA TCTGCTTCAA CGTCATATAA AAAAGCCATG
GCGTTGGCGC CTAAAAATGC CGATATCGCC AATAGCTACG GCGCGTTTTT GTGCGCCCAA
GGCGATTACG AACAAGCCAA AGTCTATTTC TTCAAAGCAT TGAATAGTGA TATTTATAAT
TCATCTGCAG AAACCTACGA GAACCTAGCG CTGTGTAGCC AAAGTCAAAA TGCGTTAGAT
GATGCGATTG GATTTCTCGA AGACGCGCTA AATCATCAAC CAGGCCGAGC CAAAAGTTTA
TTCTTGTTAG CGCAAATGCA ATTACAGGCC AATCGTTTTG CTGCAGCGAG AGATAGCCTG
CGTCGCTATG AAAAAGTGGC ATCCGTTTCT GCTGATAGTT TGTGGTTGGC GGTAAAAATA
GAGCAGGGCG CTGGTTCACC AAATCGAGCG AGTGATTATG CAAATATGCT GTTGAGTCTT
TATCCAGACT TTCAGCCAGC CCGGGATTAC ATCAATGGTA TTGAAGCTAT AGATTCGCCT
GTACAGTCTG TTAGTGTGCC AGCGGTAAAG CCTACAAAGG GATATGCGCA GCCAGATTTA
AAAGCAACTC AATATCACGT TGTTACGGCG AAGGAGAATC TTTATCGCCT TTCTTTGCAA
TATAACGTTA AGATGAGCAA ACTTATGGAA TGGAACAACA TTTCTGATCC TGCATCCATC
TATATCGGGC AAAAATTGAT CGTTGTTGAA CCCAAATAG
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| Protein sequence | MIPMNFFRAM SVIFILALSA CASQNAGTGS DDFDKQKAAK TRLSLGLTYL ENGNFSQAKF
NLDKALSFAP EMADVHYGMA YYFQNVEEYG SASTSYKKAM ALAPKNADIA NSYGAFLCAQ
GDYEQAKVYF FKALNSDIYN SSAETYENLA LCSQSQNALD DAIGFLEDAL NHQPGRAKSL
FLLAQMQLQA NRFAAARDSL RRYEKVASVS ADSLWLAVKI EQGAGSPNRA SDYANMLLSL
YPDFQPARDY INGIEAIDSP VQSVSVPAVK PTKGYAQPDL KATQYHVVTA KENLYRLSLQ
YNVKMSKLME WNNISDPASI YIGQKLIVVE PK
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