| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3047 |
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| Symbol | fliF |
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| ID | 4174819 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3677564 |
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| End bp | 3679270 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056073 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_662607 |
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| Protein GI | 109899352 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.733751 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCAGAAG CAACAGGTAC AGAATTGGCA ATGAGCAATG CCGGCGCGGA TCCATATTCA
AGTGGTTCAG AAGCAGAGCA AAAATCTGGT TTTATGGATT CACTTGGCTC CACCGACATG
GTTCGTCAAC TGACACTCGT TGTGGCTTTA GTCATATGTG TGGCGATAGC GGTATTTATT
ATGATTTGGG CACAGGAGCC TGATTATCGT CCGCTAGCGA AGATGCAAAC CCAAGAGTTG
ATTGAAGCGT TAGATTATTT TGACCAGAAC CAAGTGGATT ACCGCCTTGA AGGTAATACT
GTTTATGTCA GCGCTGATCA ATATCAAAAT ATTAAATTAG GTATGGCTCG CCAAGGCTTA
AGCCAAGGCG TGTCTGAAGG CACCGACATC ATCATGCAAG ATATGGGATT CGGTGTGAGC
CAACGTGTTG AAAAGGTACG TTTAAAGCAT GCGCGTGAAC AACAATTAGC GCGCACATTG
GAAGAAATGA GCGCGGTTAC GCGTGCGAAA GTATTACTGG CTTTGCCGAA AGAGAATGTA
TTTGCCCGCC GTGAGAAAAA AGCCAGCGCT ACCGTCGTCG TAACCTCAAG ACGCGGTGCG
ATAATGGGCA ATGAAGAGGT GAGCTCTATC GTGGACATTG TTGCATCTGC GGTGCAGGGC
TTAGAGCCTG AGCGTGTCAC AGTAACCGAT AGCAATGGGC GGCTTCTCAA TTCTGGTTCA
CAAGACAGTG AAGCGGCGAG AAGTAAAAAA GAGTTTGAAA TGGAGCGTAA GCGCGAGACT
GAGTACTTGC AGAAAATTGA TTCTATTTTG ATCCCCGTTC TTGGTCTGGG TAACTATACC
GCTCAAGCTG ATGTGACCAT GGACTTTACC GCTGTTGAGC AAACCAAACG CAGTTACAAT
CCTGACTTAC CTGCTGTGCG CAGTGAAATG ACAGTAGAAG AAAACAGTGT CGGCGGCATG
CTAGGTGGTA TACCTGGCGC CTTGACTAAT CAACCCCCGC TTGATTCGAA TATACCCGAA
GAAGCTAGCG CAAGTAACAC ACAAACAACC GTGCCGGGGC GTAATCACAA AGAAGAAACG
AGAAATTACG AGCTAGATAC CACCATCAGC CACACTAAGC AGCAAACTGG TGTCATTCGT
CGCTTGAGTG TGTCGGTTGC GCTTGATCAT GTATCGACAG TAGGTGAAGA CGGCACAAGT
ACACTTGTTC CTCGTTCGCA GGCTGAGTTA CTTGATATCC GCCGTTTGTT GCAAGGGGGA
ATAGGTTTCG ATGTTACCCG CGGTGATTCA CTGGAAGTTG TGAGCATTCC TTTTAGCCGG
GAAGGTGAGG TCGCGTTAGA AGAACTGCCC ATTTGGGAAG ACCCTAAATT TATGCCTATC
CTGAAGTTAG TGATTGGAGG GTTGGTGATA ATCGTGTTGC TTTTGGCCGT GGTTCGTCCG
ATGCTACGTA AACTTATTTA CCCTGAAGAG ACCACCTCAA AAGATGAGTT CGATGCAGAT
GAGGGGTTAG ACTTAGGTGA TGAAACCATC AGTATGTTGT CGCAAGAGTT TGATGACTCA
CAGGTTGGTT TTGCCGCTGA CGGTAGCTTT ATGTTACCTG ATTTGCACAA AGACGAAGAT
GTACTGAAGG CTGTTCGCGC ATTGGTGGCT AACGAGCCAG AGTTGTCTTC GCAAGTGGTT
AAAAACTGGT TGTTACAAGA CGAATAA
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| Protein sequence | MAEATGTELA MSNAGADPYS SGSEAEQKSG FMDSLGSTDM VRQLTLVVAL VICVAIAVFI
MIWAQEPDYR PLAKMQTQEL IEALDYFDQN QVDYRLEGNT VYVSADQYQN IKLGMARQGL
SQGVSEGTDI IMQDMGFGVS QRVEKVRLKH AREQQLARTL EEMSAVTRAK VLLALPKENV
FARREKKASA TVVVTSRRGA IMGNEEVSSI VDIVASAVQG LEPERVTVTD SNGRLLNSGS
QDSEAARSKK EFEMERKRET EYLQKIDSIL IPVLGLGNYT AQADVTMDFT AVEQTKRSYN
PDLPAVRSEM TVEENSVGGM LGGIPGALTN QPPLDSNIPE EASASNTQTT VPGRNHKEET
RNYELDTTIS HTKQQTGVIR RLSVSVALDH VSTVGEDGTS TLVPRSQAEL LDIRRLLQGG
IGFDVTRGDS LEVVSIPFSR EGEVALEELP IWEDPKFMPI LKLVIGGLVI IVLLLAVVRP
MLRKLIYPEE TTSKDEFDAD EGLDLGDETI SMLSQEFDDS QVGFAADGSF MLPDLHKDED
VLKAVRALVA NEPELSSQVV KNWLLQDE
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