| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3002 |
|---|
| Symbol | |
|---|
| ID | 4174772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3630322 |
|---|
| End bp | 3630783 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638056027 |
|---|
| Product | phage shock protein C, PspC |
|---|
| Protein accession | YP_662564 |
|---|
| Protein GI | 109899309 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1983] Putative stress-responsive transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR02978] phage shock protein C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.681381 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCA GAGGCGAGTT AACACGTGAT CCGGACAAAG GTAAAATTGC CGGGGTGTGT
GCTGGAGTCG CAGAGTACTT TGGCATCGAG TTATGGCTAG TACGTATTTT AGTGGTATCT
GCTTTCTTCT TAACGGCAGG CACGTTTGTG GTGGTAAGTT ATGTGGCGGC TTGGTTTATT
TTAGAAAAAA AATCAACGCG TCACAGTTCT TCGACTGCTA AAAGTACCCG CCATCAAGGA
GGTCAATCGA CCTCAGGCGG TAAAGGGTGG CAAAACGCCA GTGAAGATGA AGAAGAGAAG
GTAAAAGTAA AATCTAAGGT GTGGCAATCA GGTGAGCCCC CTAAGCAAGC CTTCGCGGAT
ATAAAACAGC GATTTGAGAA AAATGAAGTG CGATTAAGAC AGATTGAAAC GTATGTAACT
TCTGCTCAAT ATCAATTAAA TCGCGAAATT AATAATTTAT AA
|
|---|
| Protein sequence | MNTRGELTRD PDKGKIAGVC AGVAEYFGIE LWLVRILVVS AFFLTAGTFV VVSYVAAWFI
LEKKSTRHSS STAKSTRHQG GQSTSGGKGW QNASEDEEEK VKVKSKVWQS GEPPKQAFAD
IKQRFEKNEV RLRQIETYVT SAQYQLNREI NNL
|
|---|
| |