| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2964 |
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| Symbol | |
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| ID | 4174732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3588554 |
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| End bp | 3589915 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638055987 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_662526 |
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| Protein GI | 109899271 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000632854 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTCAAA AATCTGAGTC TTCAGGCAGC CGTGATCTGT TAAATAACCC CATAGGTAAA
ACTCTTCAAA GTATGACAGT CCCTATGCTT GTGGGCATGA TTATGATGAT GTCTTTCGGA
TTGGTTGATA CCTTTTTTAT TGGGTTGCTG GGAACCGACG AGCTCGCAGC GATCAGTTTT
ACTTTTCCTG TCACTTTTAC GCTCATCAGT TTACATATAG GTCTTGGCAT AGGGACGTCA
GCGGTTATTG CTAGGTTCCT AGGAAGTAAT AGTCATAGTG AAGCACAGCT GTCTGGTACA
GGTGCATTAA TGCTGGCTTT TGTATTGGCA ACTGTACTAG CGTTAATTGG GGTGTTTACC
ATTGACCCCA TTTTTACCTT GCTTGGTGCC AGTGAAAAGC TTCTGGAGTA TATCCATCAA
TATATGGTGG TTTGGTACGC TGCAGGTGTG TTTTTGGCAA TGCCTATGGT GGGCAATAGT
ATCCTGCGGG CATCAGGAGA TACCAAAACA CCCAGTTATG TTATGGCGGG CGGTGGGCTA
GTTAACGTTA TTTTAGATCC TATTCTGATA TTTGGCTGGG GGCCTATTCC CGCCATGGGG
ATGCAGGGGG CGGCCCTTGC TACATTAATC GCTTGGGCGT TAGGGCTAGT ATACATTCTT
TATTTACTCG CTTATAAGCG ACGGCTCATA CTATCTCGCT TACTTACTAT TCCAGAGTTA
AAGCAGGCCA TCAGCGGCAT TTTAAAAATT GGATTGCCTG CAGCAGGTGC AAATATGTTA
ACGCCGGTGG CTGGGGGGAT CCTAACTGCT GTGGTCGCAG GATACGGTCC AGGCGCCGTC
GCTGCATGGG GGGTAGGTGG CAGACTAGAG TCTATTGCCA GTATCGTTAT TCTGGCTTTA
TCCATGTCAT TACCGCCCTT TATCAGTCAA AATTACGGAG CAAATAATCT TTCTCGAGTC
TCAAAGGCTT ACCAACTTTG TGTGCGGTTT GTAATTCTTT GGCAGTTATT GGTTTTCGTT
CTGTTTTATT TTTTATCTGG TGTTATCGCC AGTGCGTTTT CATCTGAGCC TAAAGTCATT
GAGCTAATTC AAACTTATTT GATGATCGTT CCATTGGGAT ACGGTGTACA AGGCATTGTG
ATTTTAACCA ACTCGTCATT TAATGCGATG CATCTACCTA TGTCGGCTTT AATTATGAGT
GTTTTACGCT TGTTTGTTTT TTTTGTACCC ATATCTTATT TAGGGAGTTA CCTATTCGAT
TTAAAAGGTA TGTTTTGGGC TGGCATTTTA GCCAACATAA TAACGGCCAC GATCGCCTAT
TTGTGGTTCT GTCGTTCGCT TGCTAAGCGC ATTGATGCAT AA
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| Protein sequence | MSQKSESSGS RDLLNNPIGK TLQSMTVPML VGMIMMMSFG LVDTFFIGLL GTDELAAISF
TFPVTFTLIS LHIGLGIGTS AVIARFLGSN SHSEAQLSGT GALMLAFVLA TVLALIGVFT
IDPIFTLLGA SEKLLEYIHQ YMVVWYAAGV FLAMPMVGNS ILRASGDTKT PSYVMAGGGL
VNVILDPILI FGWGPIPAMG MQGAALATLI AWALGLVYIL YLLAYKRRLI LSRLLTIPEL
KQAISGILKI GLPAAGANML TPVAGGILTA VVAGYGPGAV AAWGVGGRLE SIASIVILAL
SMSLPPFISQ NYGANNLSRV SKAYQLCVRF VILWQLLVFV LFYFLSGVIA SAFSSEPKVI
ELIQTYLMIV PLGYGVQGIV ILTNSSFNAM HLPMSALIMS VLRLFVFFVP ISYLGSYLFD
LKGMFWAGIL ANIITATIAY LWFCRSLAKR IDA
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