| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2838 |
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| Symbol | |
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| ID | 4174598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3439257 |
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| End bp | 3442079 |
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| Gene Length | 2823 bp |
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| Protein Length | 940 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638055854 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_662402 |
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| Protein GI | 109899147 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATATTCA AGGCTATCAC TGTTTGTATG CGTAAAAGCG CTCACGTTTT ACTACTCTTT
GTATGCGCGC TAAATCTTTT ACTTCCAGCG GCAGCGCAAA CCAACGATTA CGAAAAAGCG
TTACATTCTT ATGATAAGGA ACGCTTTGAC GATGCATATA TCTATTTAAA ATCGAGTTTA
CAGAGTCACC CCAGTTACCT CCCCGCCAGA ATACTCATGG GTAAAATTTT GTATCAGCGC
AAAGAGTTCA GCGGAGCAGA GCAAGAATTT TCCGACGCAT ATTCTGCAGG TGCAGATATC
GAGCTTTATC TTGACCTTTG GGGCCTAAGC CTTATTGCCC AGGAGCGCTA TGACGAAGTT
ATTGACTTCG AACTGCCGAT ATCATTATCA GAACAACACC GATTAAACTG GTTAGGCTTA
TCTGCAAATG CATGCAGTTT GTTAAACCGA CTTTCATGCG CAAAAAACAG GTACAATAAA
CTACTCGCAG TATCACCTTC GAGTTCCACT GCCCTGAATG GCTTAGCTAA TATTGCACTA
ATCAACGAAG AATATGGTGA TGCCTTAAAC TATGTAGAGT TGGCATTAAA AGGGGATAAA
GAGAATGCCA ATAGTTGGCA ACTAAAAGGT CAAATTGCAA AAGCGCAAGG GCAACTATCC
AAAGCAAAAA CCTATCTAAT TCATGCATTT AATCTAGATC CTCGTAATCC ATTTATATCT
CGTAATCTTG CTGATATATA TTTGGCGATG GGCAATAATC TTGCGGCAAG CAATATTGTT
AATAATATAT TGAGTGCTAG CCCACACGAT CCATTTGCTT TACTCATAAA TAGCTGGCTA
CAGCAGCAAA ACGAAACAGT ATTCGCTGTA GATGAAGAGC TCATCACATT GGCAGGGAAA
ATTAATAGCA TACCTAGTGA AATAGTGAAT GAGCGTCCTC CCTTGCTCTA CTTACGTGCT
TTAGTCGCTT ATTTACTAGG AAACTTAGAA CAGGCGGTCA GAGATTTTAC TCGTATTCAA
TCTATCAGTA AGCCCGATAT ACAAGTGAGC ATACTTCTGG CCAAGACCTC ATTGGCATTA
GGCAAAGAAA AATCAGCATT GGCCGTTCTT GAAAGACACG AATCAGAATT GCTCGACGAT
ATTGATGGCG CGCTTTTACT TGGTGAGCTG TACTTAAGCA GAGGAAAGGT CTTCAAAGGC
GTTGAGCTAT TAAAGCAATT GCTCTTGCTA CACCCTAACA ATGTTGACAT AAAACTATAT
TCAGTAAAAT TACTTCTAGC TCGTAAAAAA TCATCTGAAA GTTTACAAAG ATTAGATTCA
ATATTGGCAG ATCATCCCAA CAACGAGCGA GTTTTAATTA CCCATAGTGT CATAAACCTA
TTGGTCAATA ATGTTGGAGC AGCTAAGTAC AGTTCTGAGA AATTACTAAC CATGCAACCA
AATAATGCTA GTTACTTAAA TTTGCACTCC TCGGTACTCA CACGACAAAA TCATTTGGAA
CAAGCCTTGA GTACCGCACA GCGTGCACTA AAATTGCAAC CCAGTATGGT TGCCGCTCAG
TATAACCTAG CCAATATTTG GCATTTGCAA GGTGATGCTG ATGAAGCTTT TCGACTGTTA
AGATTGATAC TGCAGGATCA TCGCTTACAT GTTCCCTCTC TTTTGCTTTC AGCCAAAATA
AATTATGAAA GAGAAGAATT CGATCTTGCT GTAGAGCGTT ACAAAACAGT GCTAAGTGTG
AGTATTAGAA ATGTCAAAGC TCACGAAGGA TTGCTCTTAG TCGCGTTAAA AAAACACAAT
AGTAAAGATG CGTTGTACCA AGTGGACAAG CTACTTGCTT TGGATCCCGA TAATATCAAG
TATATCGTGC AAAAAGTGCA GTTACATCAA ATCCGTGACG AGACATCTAA TGCGACCAAA
ATGCTAGATA AACTAGCATT TCTAGGCAGA AACAATCCTC AAGCATTATT TGCCCTAGCA
AAACTATACG TAAATCAGGG GGAAAACCAA AAAGCTCTTG CTGCGTTAAC ACAAGCGCAA
ACACTCGCGC CTGACAATGC CCAGCTTGCG TTACAGGTCA TTGAGCTTAT GCTCAATAAT
CACTTATCAA AAGAAGCTAA ACCACGTATA GATGAATTAG CTGAGCGTTT TCCTTCATTA
GCTAATGTAC CGTTTATGCG AGGACGTGCA GCAGAACAAG AGCAAGATAT CGCAACAGCA
CAACGAATGT ATGAGTACGC GCTAAAACTT GATCCACAAT TTGATTTAGC GCTAGGTAAG
CTGTTTAGTT TTGCTCGTCA AGAAGTGGCT GTTTCATCAT TTTTAACTCA TGCGAATAAG
ACAATTGAAC AACAACCGAC CCGATATTTT CCTCGAAGCT TGCTTGCACA ATACTATTAC
TATAACCACC AGCACTCACT AGCACTTGTT CACTATGAAG CTTTACTTAG CTTATCAGAA
GTGCCTGACA AAGCAGCCTT ACTTAATCGA TTGGCTTGGC TCTACATGCC CAATAATTTA
CCCAAAAGTG CAGATTTTGC AGCACAAGCA TACGAAATAG ATAGAAATGA CATAAATGTG
TTGGATACTT ACGGCTGGAC ACTGACTCAA CTTGGGAGCC ACAAAGAAGC ATTAACCATA
TTGAGAGAAG CCGCCCTTCG TAACGCAACA TCTGAATTGA TAAAATACCA TCTCGCATAC
ACGTTACTCC AACTCAACAG AATAAATGAA GGCAAACACC TTCTTGAAAG CGCCCTTAGC
ACTGATAGTG ACTTCTACGG CCGCAGTGAG GCCCAAACGT TAATGTCGAA TATAGATATG
TAA
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| Protein sequence | MIFKAITVCM RKSAHVLLLF VCALNLLLPA AAQTNDYEKA LHSYDKERFD DAYIYLKSSL
QSHPSYLPAR ILMGKILYQR KEFSGAEQEF SDAYSAGADI ELYLDLWGLS LIAQERYDEV
IDFELPISLS EQHRLNWLGL SANACSLLNR LSCAKNRYNK LLAVSPSSST ALNGLANIAL
INEEYGDALN YVELALKGDK ENANSWQLKG QIAKAQGQLS KAKTYLIHAF NLDPRNPFIS
RNLADIYLAM GNNLAASNIV NNILSASPHD PFALLINSWL QQQNETVFAV DEELITLAGK
INSIPSEIVN ERPPLLYLRA LVAYLLGNLE QAVRDFTRIQ SISKPDIQVS ILLAKTSLAL
GKEKSALAVL ERHESELLDD IDGALLLGEL YLSRGKVFKG VELLKQLLLL HPNNVDIKLY
SVKLLLARKK SSESLQRLDS ILADHPNNER VLITHSVINL LVNNVGAAKY SSEKLLTMQP
NNASYLNLHS SVLTRQNHLE QALSTAQRAL KLQPSMVAAQ YNLANIWHLQ GDADEAFRLL
RLILQDHRLH VPSLLLSAKI NYEREEFDLA VERYKTVLSV SIRNVKAHEG LLLVALKKHN
SKDALYQVDK LLALDPDNIK YIVQKVQLHQ IRDETSNATK MLDKLAFLGR NNPQALFALA
KLYVNQGENQ KALAALTQAQ TLAPDNAQLA LQVIELMLNN HLSKEAKPRI DELAERFPSL
ANVPFMRGRA AEQEQDIATA QRMYEYALKL DPQFDLALGK LFSFARQEVA VSSFLTHANK
TIEQQPTRYF PRSLLAQYYY YNHQHSLALV HYEALLSLSE VPDKAALLNR LAWLYMPNNL
PKSADFAAQA YEIDRNDINV LDTYGWTLTQ LGSHKEALTI LREAALRNAT SELIKYHLAY
TLLQLNRINE GKHLLESALS TDSDFYGRSE AQTLMSNIDM
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