| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2788 |
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| Symbol | |
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| ID | 4174548 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3384872 |
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| End bp | 3385750 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638055805 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_662353 |
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| Protein GI | 109899098 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGTTTAC GTCATATAGA AATATTTCAT GCTATTTATA CCACGGGCTC AATTACCAAC
GCGGCTAAAA TTTTGCACGT ATCGCAACCT GCCGTGAGTA AAGTGCTGCT TCATGCAGAG
CAGCAATTAG GGTTTGCGTT ATTTACTCGT AACAAAGGCC GCTTGATCCC AACCCCTGAA
GCAAACATGT TGTTTCATGA AGTGGACAAA ATACATCAGC AAATGCGTAC TATCGATAAC
ACTGCGCACA ACATAAAACA TGCTCACTCG GGCAACATTA ATATTGGTAT TACCCCGGCG
TTGGGGTTTG ACATATTGCC AAGAGCCATC GCTCGCTATC ATCAGCAGCA CCCAAACGTG
AGCTTCAGCA TTAATACCGT ACACAACGAC GCGGTCTTAC AAAGCCTTAT TGAGCATAAA
TCTGATGTGG CCGTTTTGTT TCATCCGAGC CCTAAATTAG GCGTAGATAG CATTGAATGT
GGGCAGTCTG AGTTGGTAGT TGTTTACCCT AAAGCGTTAT TCCCTGATGC ACCTTCGCTG
CTTAGCATCG AAGCCTTGGC AAATGTTAGC TTTATTGGTA TTAGTGATTC AGGCCCATTG
GGGGATATGC TCTACAGTCG TTTGCAAAGC GAAAACATGC AGCCTCATAG TCCTATACAG
GTACAAACCT ATTTTATTGC AGCAAGATTA GTGGCACAGG GCTTAGGGGT ATGCGTAGTA
GACAAACACA CGGCGCTAGG AAATTTAAAT GATAACATCG CCATGGCATC GTTCACCCCG
CCCCTTAGCT TTTCTATTAA TGCCCTGCAT TTACAAAACA GGCCACTGTC TAAAGTAGTC
CAGGGGTTTC TGCCGTATCT ACAAGCAGAA ATAACCTAA
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| Protein sequence | MRLRHIEIFH AIYTTGSITN AAKILHVSQP AVSKVLLHAE QQLGFALFTR NKGRLIPTPE
ANMLFHEVDK IHQQMRTIDN TAHNIKHAHS GNINIGITPA LGFDILPRAI ARYHQQHPNV
SFSINTVHND AVLQSLIEHK SDVAVLFHPS PKLGVDSIEC GQSELVVVYP KALFPDAPSL
LSIEALANVS FIGISDSGPL GDMLYSRLQS ENMQPHSPIQ VQTYFIAARL VAQGLGVCVV
DKHTALGNLN DNIAMASFTP PLSFSINALH LQNRPLSKVV QGFLPYLQAE IT
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