| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2781 |
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| Symbol | |
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| ID | 4174541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3374277 |
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| End bp | 3375893 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638055798 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_662346 |
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| Protein GI | 109899091 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0926901 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTCAA CAAATGTTTC CTCTTTTGAT TTCATCATTG TTGGTGCAGG TTCAGCAGGA
TGTGCGTTAG CCGCGCGGTT GACTGAAAAT AGTCACTATC GTGTGTGTCT TATTGAAGCG
GGTGGTCAAG ACTGCAATCC AATGATCCAT ATTCCGTTCG GGCTATCTCT ATTATCTCGC
TTTAAAAATA TCAATTGGAA TTTCAATACG ACGGCTCAGG CTGGCTTGAA TAACCGAGCC
TTGTTTTGGC CAAGGGGAAA AACCTTAGGC GGCTCTAGCG CGATTAATGC CATGTGTTAT
GTGCGCGGTG TTCCCAAGGA TTATGATCGT TGGCAACAAG AGGGTGCCTT AGGTTGGGAT
TGGGACGCAG TGTTGCCCTA TTTTAAAAAA TCTGAAGACC AACAGCGTGG AGCCGATGCC
TATCATGGTA CCGGTGGCCC TTTGTGTGTG GACGACCTAC GCTTTGTCAA TCCTATGTCG
CAGACGTTTG TTGATGCAGC TCATGACGTT GGAGTGCCTA TTAGCGAAGA TTTTAATGGT
GCTCAGCACG AGGGCTTAGG GATATATCAA GTCACGCATA AAGATGGTCA GCGCTGCTCT
AGTGCTAAAG GCTATTTGGC TTTAGCACAA ACCCGCGATA ATTTTACCTT GATAACACAG
GCGTTGGTCG AAAAAATCAT CATTAAAGAC AGCCGAGCAA CAGGACTGAC GTTGCGCATT
AATGACAAGC TACACGTGCT TAACGCGACC AAAGAGGTAC TGCTTTGCGC GGGCGCAATC
AATTCACCTC AGCTATTAAT GTTATCAGGG ATCGGTCCGA AGCAGCATCT AGAGGACAAA
GGTATTGAGG TGCTAAAGGA TTTGCCCGGG GTCGGTCAAA ATTTGCAGGA TCACCTTGAT
GCGATCATTC AGTACCGCTG CCAATCTACA CACAGTTATG CCATTTCGTT ATCTAAGTTG
CCACGTTATG TGAAGGCGGC TCTTCGTTAT TGGCGCAAGC GCAGCGACAT TTTTTCGTCA
AATATCGCTG AAGCAGGTGG GTTTGTAAAA AGCCAGTTCG CTAGTTCATT GCCGGACATT
CAATACCACT TTTTGCCGGC AATTTTACAA GATCATGGTC GACAAACTGC ATTTGGTTAT
GGCTTTGGTT TGCACGTGTG TAATGTGTAT CCTAAAAGCC GAGGTGAGAT CACCCTTGCT
TCAAGCGACC CAGCTGCCCC TGCGGTAATT GACCCGTGTT ATCTGTCTCA TCCTGACGAC
CAAAATGTGA TGATCGATGG CATTAGACAA GGCCGAGAGA TTTTACAATC CCGAGGGTTT
CATGACTACC AAGGTAAAGA AGTGAAGCCC GGTGTTGCAA TGCAAAGCGA TGAGCAATTA
CTAGCGTTTT TAAAAGCGAA TGCAGAAACG ATTTATCACC CCGTGGGGAC GTGCAAAATG
GGCGCCGACA CAGATGATAT GGCGGTAGTA GACAATGTAT TAAACGTGCG CGGAGTAGCG
GGCTTACGGG TGGTTGATGC GTCAGTCATG CCCAGCATAA TTGGGGGTAA CACCAATGCA
CCTACTATTA TGATTGCTGA GCGAGCAGCG GATTTTATTA AACAACATCA TCGATAG
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| Protein sequence | MSSTNVSSFD FIIVGAGSAG CALAARLTEN SHYRVCLIEA GGQDCNPMIH IPFGLSLLSR
FKNINWNFNT TAQAGLNNRA LFWPRGKTLG GSSAINAMCY VRGVPKDYDR WQQEGALGWD
WDAVLPYFKK SEDQQRGADA YHGTGGPLCV DDLRFVNPMS QTFVDAAHDV GVPISEDFNG
AQHEGLGIYQ VTHKDGQRCS SAKGYLALAQ TRDNFTLITQ ALVEKIIIKD SRATGLTLRI
NDKLHVLNAT KEVLLCAGAI NSPQLLMLSG IGPKQHLEDK GIEVLKDLPG VGQNLQDHLD
AIIQYRCQST HSYAISLSKL PRYVKAALRY WRKRSDIFSS NIAEAGGFVK SQFASSLPDI
QYHFLPAILQ DHGRQTAFGY GFGLHVCNVY PKSRGEITLA SSDPAAPAVI DPCYLSHPDD
QNVMIDGIRQ GREILQSRGF HDYQGKEVKP GVAMQSDEQL LAFLKANAET IYHPVGTCKM
GADTDDMAVV DNVLNVRGVA GLRVVDASVM PSIIGGNTNA PTIMIAERAA DFIKQHHR
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