| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2689 |
|---|
| Symbol | |
|---|
| ID | 4174449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3275368 |
|---|
| End bp | 3276420 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638055707 |
|---|
| Product | xylose isomerase-like TIM barrel |
|---|
| Protein accession | YP_662255 |
|---|
| Protein GI | 109899000 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCTA TTAAAGGCCC CGGAGTATTT TTAGCCCAGT TTATGAGTGA TGAAGCGCCT
TTCAACAGTT TGGATTCGAT TGCTACATGG GCAGCCTCGT TGGGATATAA AGGAATTCAA
GTTCCCACTG GCGATACAGC AATATTCGAT TTGGAGCGCG CAGCGAATAG CCAAGAGTAC
TGTGATGAGG TGATGGCGAT TTGTAACAAA GCGGGCGTGC AGATCACAGA ACTTTCTACG
CATTTACAAG GCCAGCTAGT GGCTGTGCAC CCAGCATATG ATGAACTTTT CGATAACTTC
GCCCCTGAAG CGCTGCGGGG CAAACCCGCC GAGCGCACCG AGTGGGCAAT ACAACAAATG
AAATGGGCCG CAAAGGCAAG CCAACGCCTT GGCTTAACAG CGCATGCCAC GTTTTCAGGT
GCGTTTTTAT GGCATTTAGC ATATCCCTGG CCACAGCGCC CTGCGGGCTT AGTTGAGCAA
GGTTTTGCTG AGCTGGCAAA ACGTTGGTTA CCTATTTTAG ATGCGTTTGA TGAGGCGGGC
GTGGACGTCT GTTATGAAAT TCACCCCGGT GAGGATTTAC ACGATGGGGC GTCATTCGAA
TTGTTTTTGG ATGCCGTTAA TGGCCACCCC AGAGCGAATA TTTTGTTTGA CCCGAGCCAC
TTTGTTTTAC AACAGCTTGA TTACCTACAA TTCATCGATT TGTATCATGA GCGCATTAAG
ATGTTCCATG TAAAGGATGC CGAATTTAAT CCTAATGGGC GTTCTGGTGT TTACGGAGGT
TATCAAGACT GGAAGGAACG CCCAGGCCGT TTTCGTTCAT TGGGCGACGG CCAAGTCGAC
TTTAAAGGAA TATTTAGCAA ACTAACCCAG TATGGGTTTG ATGGCTGGGC CATTTTGGAA
TGGGAATGCT GTTTAAAAGA CTCAAACCAA GGGGCCGCTG AAGGTGCGCC GTTTATCGCA
AGCCATATTA TTACCCCCGC AGGGCGCGCG TTTGATGATT TTGCTGGTGC AGTGAGTGAC
GAGCAGCGCA ATCGCAGAAT ATTGGGGCTG TAA
|
|---|
| Protein sequence | MPAIKGPGVF LAQFMSDEAP FNSLDSIATW AASLGYKGIQ VPTGDTAIFD LERAANSQEY
CDEVMAICNK AGVQITELST HLQGQLVAVH PAYDELFDNF APEALRGKPA ERTEWAIQQM
KWAAKASQRL GLTAHATFSG AFLWHLAYPW PQRPAGLVEQ GFAELAKRWL PILDAFDEAG
VDVCYEIHPG EDLHDGASFE LFLDAVNGHP RANILFDPSH FVLQQLDYLQ FIDLYHERIK
MFHVKDAEFN PNGRSGVYGG YQDWKERPGR FRSLGDGQVD FKGIFSKLTQ YGFDGWAILE
WECCLKDSNQ GAAEGAPFIA SHIITPAGRA FDDFAGAVSD EQRNRRILGL
|
|---|
| |