| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2683 |
|---|
| Symbol | |
|---|
| ID | 4174443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3268064 |
|---|
| End bp | 3269632 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638055701 |
|---|
| Product | SSS family solute/sodium (Na+) symporter |
|---|
| Protein accession | YP_662249 |
|---|
| Protein GI | 109898994 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4146] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.135189 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTATT CACTCGACCC AATTGATCTG GGGGTGTTTA TTGTATACGC CGCTGGGTTA
CTTGCCCTTG CTCTTTGGAT ATCCCGAGAC GAGAAGTCAC ATGACAGAAC CACACAAGAT
TATTTCTTGG CCAGTAAATC GCTACCCTGG TGGGCAATTG GTGCGTCATT GATTGCGGCC
AATATTTCAG CAGAACAAAT CATTGGCATG TCAGGCTCTG GCTTTGCGTT AGGCCTCGGC
ATTGCCTCTT ATGAATGGAT GGCGGCCATT ACATTGATTT TAGTGGGTAA GTATTTACTG
CCCATATTCC TTAAAAATGG CATTTACACC ATGCCGCAAT ATTTAGAGCA ACGCTTTGAC
AGTCGGGTTA AAACTACTTT AGCGCTTTTT TGGTTAGGGG TATTTATCTT CGTCAATTTG
ACCTCGGTTT TGTGGTTAGG GGGATTAGCA ATACAAAGCG TCGCTGGTAT TGATTGGATG
TATGGCATGA TCTTTTTAGC TGTTTTTTCT GTGGCGTATT CCACCTACGG TGGACTAAAG
GCAGTGGCGT ACACTGATAT CATTCAAGTG GTGTTACTGG TTTTCGGGGG CTTCTTTTTA
AGTTACTTAG CGCTGCAACA AATATCGGGC GGGGAAGGGG TCTTGAAAGG CTTTAACATA
TTAACCGAGA AAGTCCCGGG CCACTTCGAC ATGATTTTAA GCCCTGATAA TAGCGAATAC
ATGAATCTGC CCGGTATCTC CGTGTTAGTG GGCGGTCTGT GGGTGATGAA CGTTGGATAT
TGGGGCTTCA ACCAATATAT TATTCAGCGA GCGCTGGCGG CAAAAAGCAT TCAAGAAGCG
CAAAAAGGTA TTGCGTTTGC CGCGTATTTA AAGTTACTTA TGCCGATCAT AGTGGTGTTG
CCTGGTATCG CAGCGGTTAT CTTGTTTCCA GACATTGAAA AGCCCGATCA AGCTTACCCA
TCAATGATGT CGCTTATGCC AGTGGGTATA AAGGGACTAG TGTTCGCCGC ACTTGTAGCC
GCTATTGTTT CGTCTTTAGC GTCAATGACC AACAGTATTT CAACTATTTT TACCATGGAT
ATTTACCGCC CTGTGCGTCA TGACAAAGAT GAAAATCACT ATGTGAATAT TGGGCGCTTG
GCAACTGTTA CCTCTTTGGT GGTAGCGGTC TGTGTTGCCC AGCCCCTTAT CGGGCAGTCA
GAGCAGGCGT TTCAATACAT TCAGGAATTT ACCGGGTTGT TTTCCCCCGG GATCACAGTG
ATTTTCCTAA TGGGCATGTT CTGGAAGCGC ACTACGTCCT CAGGTGCGCT AGCAGCAGCG
ATTGGCTCCG CACTTTTCTC TGTATTGTTT GCCCTTTTCT TACCTGAGTT GCCATTTATG
GATCGCATCG GCATCGTATT TTTAATGTGC TTAGCCTTAA CCTATTTCGT ATCATTACGT
GAGTCCGCAC CAAAAAATGA TAGCAGCGTA GATTTAAGTG ATGTGAACTT TGGTACTACA
ACTGGCTTTA ATATCGCGGG CATAGGCTGT GTGTTAATAC TCATAGGTCT GTACGTCACC
TGGTGGTAA
|
|---|
| Protein sequence | MNYSLDPIDL GVFIVYAAGL LALALWISRD EKSHDRTTQD YFLASKSLPW WAIGASLIAA
NISAEQIIGM SGSGFALGLG IASYEWMAAI TLILVGKYLL PIFLKNGIYT MPQYLEQRFD
SRVKTTLALF WLGVFIFVNL TSVLWLGGLA IQSVAGIDWM YGMIFLAVFS VAYSTYGGLK
AVAYTDIIQV VLLVFGGFFL SYLALQQISG GEGVLKGFNI LTEKVPGHFD MILSPDNSEY
MNLPGISVLV GGLWVMNVGY WGFNQYIIQR ALAAKSIQEA QKGIAFAAYL KLLMPIIVVL
PGIAAVILFP DIEKPDQAYP SMMSLMPVGI KGLVFAALVA AIVSSLASMT NSISTIFTMD
IYRPVRHDKD ENHYVNIGRL ATVTSLVVAV CVAQPLIGQS EQAFQYIQEF TGLFSPGITV
IFLMGMFWKR TTSSGALAAA IGSALFSVLF ALFLPELPFM DRIGIVFLMC LALTYFVSLR
ESAPKNDSSV DLSDVNFGTT TGFNIAGIGC VLILIGLYVT WW
|
|---|
| |