| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2628 |
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| Symbol | |
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| ID | 4174388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3191560 |
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| End bp | 3192273 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055648 |
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| Product | cold-shock DNA-binding domain-containing protein |
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| Protein accession | YP_662196 |
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| Protein GI | 109898941 |
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| COG category | [K] Transcription
[S] Function unknown |
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| COG ID | [COG1278] Cold shock proteins
[COG3326] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.326591 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGTTTC AGGGAAAGGT GTTTAATTGG AATGATGACA AGGGCTTTGG TTTTGTTGAG
CCAAATGGGG GCGGTGAGCG GGTGTTTGTG CATATCAAAG CGTTTACGCC ACGTTCTCGG
CGGCCGGTTG ATGGGGACGT CATCACCTAT GAGTTGGTGC GCGAGTCTCA CAATCGCTGT
AAAGCTGAGA ATATTCAGTT TGCTCGGGGA TTAAACGGGG CTAGCACTAG GCAAGCCAGT
ATAAAGTCTG CTAATCCCAA CAAAGCAAAT AAACACAAAG CGAATAAGCG TAGAACAAAT
AACAATACCA CCGTGAATGT ATTCTTAGTG CTGTTTTCGA TTGCCTTAGT TGTATCTATT
TTGATGGGGG CACTACCTCT GGTTATTGGT GGTGTGTACC TTGTCATGAG CATGATTGCA
TTTGTTGCCT ATGCGCTTGA TAAGTCAGCT GCGCAGAATG GTCGTTGGCG CACCAAAGAG
AGCACGTTAC ATTTGTTTGC TTTTTTAGGT GGCTGGCCAG GCGCCTTGTT AGCGCAAAAT
CGCTTGCGAC ATAAATCGAG TAAGGCGGAG TTTAAAAACG TCTTTTGGTT TACTGTGGTG
TTAAATCTAG GCGGTTTGTA TTGGTTGCAC ACAGAAGACG GAGCGGTGTT TTTGAATGAT
AAAGTGTTGC CGTTTGTCAG TACTTTGCAA AGTATGGTGA TAGGGGGGAG CTAA
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| Protein sequence | MRFQGKVFNW NDDKGFGFVE PNGGGERVFV HIKAFTPRSR RPVDGDVITY ELVRESHNRC
KAENIQFARG LNGASTRQAS IKSANPNKAN KHKANKRRTN NNTTVNVFLV LFSIALVVSI
LMGALPLVIG GVYLVMSMIA FVAYALDKSA AQNGRWRTKE STLHLFAFLG GWPGALLAQN
RLRHKSSKAE FKNVFWFTVV LNLGGLYWLH TEDGAVFLND KVLPFVSTLQ SMVIGGS
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