| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2622 |
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| Symbol | |
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| ID | 4174382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3185878 |
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| End bp | 3186564 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638055643 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_662191 |
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| Protein GI | 109898936 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTGGATAG CTTCTGTGGC TCAACCTACA CCGATAACAA AGCCGCTGTA CAGCGACGCT
GGCAGTGGAA TTATATTTAA CTTTGTAGGT GATGTGATGA TCGGCCGTGA TACCTTGCAT
GAAGGTGTCA TTATGCTTCC TATCAATAAA CAAGCTCAGC GTATTGTTCT ATCACCAGGG
GCGCAACTTG CGGGTATTCG TTTTCATCCC GCAATCGGGT ATGGTGTTTT GGGGCGGCAC
TATGACAAGC CAACGCTATT ATCGCCAGAG CAAGACGAGC AATATCGTCT CTACCAAATT
TATAATCAAC TTAGGTTACA CAAAGGCAAT AGTAGCTCAC TTGAAATACT AAACCTTTGG
GCAAATAAAA ATTTGGATTT TACCAATGTA CTCCCAGATT CTCTGGACAA AGCATTGCAA
TGCATAGAGC AGGATGAGTT GCTCGGCCAG CTCAGTGATA GTATCGATTT GAGCCAAAGA
CAAATTGAAC GTATTTTTAA GCTTAGGTTG GGAATGACTC CTAAATATTA TCAGCGCATC
CTTCGGATAA AAAAAACTAT CGGCTTTTTA CGCCAACACC CAACCCCAAA TTTGGCGGAT
GTAGCTCAGC AATTTGGCTT TAGCGACCAA GCTCATATGA CGCGAGAATT CCGTGCAATT
GCCTGTGTGA CGCCAAAACA AGTGTGA
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| Protein sequence | MWIASVAQPT PITKPLYSDA GSGIIFNFVG DVMIGRDTLH EGVIMLPINK QAQRIVLSPG
AQLAGIRFHP AIGYGVLGRH YDKPTLLSPE QDEQYRLYQI YNQLRLHKGN SSSLEILNLW
ANKNLDFTNV LPDSLDKALQ CIEQDELLGQ LSDSIDLSQR QIERIFKLRL GMTPKYYQRI
LRIKKTIGFL RQHPTPNLAD VAQQFGFSDQ AHMTREFRAI ACVTPKQV
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