| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2555 |
|---|
| Symbol | |
|---|
| ID | 4174310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3098767 |
|---|
| End bp | 3099714 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638055572 |
|---|
| Product | methyltransferase type 11 |
|---|
| Protein accession | YP_662125 |
|---|
| Protein GI | 109898870 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
|---|
| TIGRFAM ID | [TIGR02072] biotin biosynthesis protein BioC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00279696 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGATA AGGTAAATGT TTCTGCTAAG CATTCAGCCG CTAAGATTCG CCCTGTGGCA
AATTCTGCGC GAATAGAAAG CGTTGAAAAT AATATTGTTA ACACCAATAT TAATCATGAA
CAGCAACTCA AGTCTCGTAT TGCCAAACAG TTTAGCCGTG CAGCAACGCG TTACGATGCT
GCAGCGCAAG TACAAATCGA TATCGCCGAT GATGCCTTGA AATTGTTCTT TGAAAGGTGT
GACGAGCACA GTCAAATATT GCCTAAACGC ATTATTGATA TTGGCTGCGG CACCGGGCGG
GTAACGCGTG AATTAGCACG TCTTAATACG CAGCACACAT CACATATTTT CGCCATGGAC
CTTGCCCTAG GGATGCTAAA GCACGCAAGA GAGCAAACCG TTGAGGACGC TCCTAACACT
AACATTAGTT GGCTTCAAGG TGACGCGGAA CATTTGCCCC TGGGGGATAG TGCCGCAAGT
GGTGTGTTCT CATCCATGGC GCTGCAGTGG TGTAAAAACA GTACCCAAGT ATGTACTGAA
ATTAACCGAG TACTAGCCCC TGGGGCAAGT GGCGTGCTGG CCATCATGTG TCAAGGCTCC
ATGCACGAGC TAGATACATG TTGGCAGCAC GTTGATAGTC AGCGCAAAAT CAATCAATTT
GCGTCAGCCG AAACATGGTC AAGTGCGGCA AAAGCGGCAG GATTACAGGT GACGGCGCAG
CAGAAAAGTT ACGTGACATG GCATAAAGAT GTGCGCGAGT TACTTGGGTC AATAAAAAAC
ATTGGCGCTA ATGTCGTTAC CAGCAACACG CGACAAAAAG CCATTAGCCG TAACACGCTA
CATGCACTTG AGCTCTACTA TCAAAGCACA TTTGGCCGTA ATCAAGGGTT ACCCTTGACG
TATAATGTGT GCTTCTTAAG CCTGGTAAAG CCAGTTAGCA AGCAATGA
|
|---|
| Protein sequence | MADKVNVSAK HSAAKIRPVA NSARIESVEN NIVNTNINHE QQLKSRIAKQ FSRAATRYDA
AAQVQIDIAD DALKLFFERC DEHSQILPKR IIDIGCGTGR VTRELARLNT QHTSHIFAMD
LALGMLKHAR EQTVEDAPNT NISWLQGDAE HLPLGDSAAS GVFSSMALQW CKNSTQVCTE
INRVLAPGAS GVLAIMCQGS MHELDTCWQH VDSQRKINQF ASAETWSSAA KAAGLQVTAQ
QKSYVTWHKD VRELLGSIKN IGANVVTSNT RQKAISRNTL HALELYYQST FGRNQGLPLT
YNVCFLSLVK PVSKQ
|
|---|
| |