Gene Patl_2542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2542 
Symbol 
ID4174297 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp3083417 
End bp3084037 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content44% 
IMG OID638055559 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_662112 
Protein GI109898857 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.671872 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTGAAT ACAGCTTTTT GATCAGCATA GGAATAGTAT TTATGCTCGG TACCATGAGT 
CCTGGCCCTA GTTTTATATT GGTCGCAACA ACCGCAGTCA GCAAATCAAA AATGCAAGGA 
TTTGGTGTCA CGCTAGGCCT CGCCATAGGT GCCGCTATTT TCGCGCTTTT AGCGATATTT 
GGCTTGTACG CTATTTTACA GGCAGTGCCA TCTATGTATG TTGCTTTAAA AGCGCTTGGG 
GGAGCGTATT TACTATACCT TGCTTATAAG ATGTGGAAGC ACGCTAGTGA ACCAATGAAG 
GTGGTAGCGC CTGAGGAAAC AAACACAAAA AATTTTTTAA AAGCGGTGCT ATTGGGGTTA 
ACAACCCAGT TGAGTAACCC GAAAACAGCC ATCATCATTG GTAGCATTTT TGCCGCTCTC 
TTGCCAAATG AAATCCCAGT ATACGGTGAG GCACTACTGT GCTTACTCGC GTTCACTGGG 
GATATTGCTT GGTACTCCTT GGTCGTACTC TTGCTGTCGA CGAAGAGAGC CCAACATACT 
TACTTACGAT TCAAGCAACA CATAGACAGA TTAGCAGGCG GATTATTGGG GCTATTAGGC 
ATCAAACTCG TCATTGATTA A
 
Protein sequence
MGEYSFLISI GIVFMLGTMS PGPSFILVAT TAVSKSKMQG FGVTLGLAIG AAIFALLAIF 
GLYAILQAVP SMYVALKALG GAYLLYLAYK MWKHASEPMK VVAPEETNTK NFLKAVLLGL 
TTQLSNPKTA IIIGSIFAAL LPNEIPVYGE ALLCLLAFTG DIAWYSLVVL LLSTKRAQHT 
YLRFKQHIDR LAGGLLGLLG IKLVID