| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2539 |
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| Symbol | |
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| ID | 4174294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3079273 |
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| End bp | 3080610 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638055556 |
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| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
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| Protein accession | YP_662109 |
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| Protein GI | 109898854 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAAACC TCTTTAGTCT GTTCATACTT ACCTGCGTTT TCAGCTCAGC CGCACTGGCT
TTTGATAAAG CCAAGTTAGA TAAATACATA GAAAGCCTAG ATACCCATGA CAAGGCCATG
TTCAGTGTGG CTGTGGTGCA AAATGGCCAA CCTATTTATC AAAAATCCAT TGGCTATGTA
GATATCGAAA CTAAGCAAGT CGCCAATAAG AACACTCAGT ATCGTATTGG CTCCATCACG
AAAGTATTCA CATCCACAAT GATTTTTCAG CTTATTGATG AAGGTAAGCT TGCATTAGAT
ACCAAGCTCG CAACCTTCTA CCCGCAAATC AAGAACGCCG AATTGATCAG CATGTCCATG
CTACTTAACC ATAGAAGCGG TATTCATAAT TTCACCGATA CCCCTGATTA CGAGCAATAC
ATGACTAAAG CTAAAACCAA AGCTGAAATG GTAAGCTTGA TTGGATCGTT AGACAGCGAT
TTTACACCAG ACAGCGCGGC CAGTTATTCA AACAGCGGCT ACGTACTACT GGGGTTTATC
ATTGAGGACA TCACAAATGA TAGCTACGAA AATCAGTTAC ATAAGCGAAT TACCGCTAAA
GTAAACCTGA ACAGAACGAC ATTTGGCGGA CCCGTTAAGC CGTCAGATAA TCAAGCTCAC
TCTTATAAAC ATGCAACAAG CGAATGGGTC GCACATTCAG AAACTGACAT GAGTATTCCA
TATGGGGCCG GCGCTATTAT CTCTACCTCG ACTGAAGTCG GGATATTTAT CGAAAATCTC
ATGACTGGCA AGCTTACCTC AGCAAACTCA CTGGCGAAAA TGAAAGAGCT TAATCAAGGT
TATGGGCGCG GACTGTTTGC ATTTCCGTTT CATGAAAGAA TCGCTTACGG ACACACAGGA
GGAATTGACG GATTTACCTC TCACACTGGC TACATTGGTG ACGATGAAGT TGTTTTTACC
TTGACCTCTA ACGGTATGAA CATGTCAATG AACGATATCA GCATTGCCAT TTTAAGCATC
TACTACGATA TGCCGTTTGA TTTACCTGAC TTTGGTCAAA AAGCCATTAC CTTAACCGAA
AGAGAATTAA GCCAATACCA AGGTGTGTTT TCGTCAAAAC AAATAGCGCT TAACATTACC
CTCAAAACCG ATGGGGCTAT TCTGACAGCA CAAGCCACCG GTCAGAAAGC ATTTAACCTA
ACGTCCTATT CCAGCACTGA TTTTCGTTTC GATCCGGCGG GAATAAAAAT ACAATTTGCC
ACTCAAGGGG AAAAGGTTGA TTACACCACC TTTGCGCTCA AACAAGGGGG CGGTAAGTAC
ACGTTTATCC GCGAGTGA
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| Protein sequence | MKNLFSLFIL TCVFSSAALA FDKAKLDKYI ESLDTHDKAM FSVAVVQNGQ PIYQKSIGYV
DIETKQVANK NTQYRIGSIT KVFTSTMIFQ LIDEGKLALD TKLATFYPQI KNAELISMSM
LLNHRSGIHN FTDTPDYEQY MTKAKTKAEM VSLIGSLDSD FTPDSAASYS NSGYVLLGFI
IEDITNDSYE NQLHKRITAK VNLNRTTFGG PVKPSDNQAH SYKHATSEWV AHSETDMSIP
YGAGAIISTS TEVGIFIENL MTGKLTSANS LAKMKELNQG YGRGLFAFPF HERIAYGHTG
GIDGFTSHTG YIGDDEVVFT LTSNGMNMSM NDISIAILSI YYDMPFDLPD FGQKAITLTE
RELSQYQGVF SSKQIALNIT LKTDGAILTA QATGQKAFNL TSYSSTDFRF DPAGIKIQFA
TQGEKVDYTT FALKQGGGKY TFIRE
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