| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2513 |
|---|
| Symbol | |
|---|
| ID | 4174268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3048804 |
|---|
| End bp | 3049850 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638055530 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_662083 |
|---|
| Protein GI | 109898828 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1975] Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCAAATA GATTAAATCA ATTGTTAAAG CAGTGGCTTA GCCAGAAAGA TACGCAAAAG
TGGGTGTTAG CCACCATCAT AGAAACTGAC GGCTCTTCCT ATAGAAAAGC CGGTGCGATG
ATGATGATCA ACGATTTAGG GCAATATTTT GGCTTGCTCA GTGGCGGCTG TTTAGAATCC
GATATTATGT TACAAGCGCG TCGTTGTTGG GATTCTGGGC GCAATCGTAT CGTCGAATAT
GATATGCGAG AAGAAGAAGA CCTGGCGTGG AAACTGGGCA TTGGCTGTGG TGGTATGGTG
CGCATATTGT TGCAACCAGT GGATGAGGCG AATCAGTATT TGCAGCTTGA TTCGTTGTAC
GCGCTATTAG AAAGTAACCA AACCGCAGAA TATTGCCAAG TCATTAACGA TCAAGTCCCG
CTTAATACGT TAAAGACACT AACGTTAAAG CAAGCTGCGC CAGAACAAGC AAAGTCAATT
GAAGGGGCTT TAAAAAAGGC TGACACCGAC CGGAAGACTG AAACGCAGCA GGGGGTTTTC
AAACAATACC TCAAACCCGC GCCTCATTTA GCCGTATTTG GTGGCGGTGT AGACGCTCGC
CCAGTGGTGG CTATAGCAAC GCAACTTGGA TGGCAAGTCA CCTTAGTCGA CCCACGCACC
AGTTACGCAA GAAACGGTCA TTTCGATAAC AGTGTCAGCG TGGTACGTGA CGCCATTGAG
TCGCTTGAGC AAAATCGATG GTTACAGCAA ATCGATATGG CCATCATTAT GACCCACAAT
ATTAAATTAG ATGCCCAATC GTTAGCACTA GTGCAGAAAA GCAGTGCAAA GTATGTGGGT
ATGCTTGGTC CGATTCATCG GACTGATCGA GTGCTTGATT TGATCCCCAC CACCCGCGAA
CAGCTCGTTA AACCCTTGGC TAATCCGGTT GGCTTACGCT TAGGCGGAGA GCTACCTGAA
TCCATTGCTT TATCTATGCT ATCTGAGGCC CACGCCTTTA TTGAGCAGCA AAATGGGTTA
TCTATCAGCG GTATTCTTCG TCAATGA
|
|---|
| Protein sequence | MANRLNQLLK QWLSQKDTQK WVLATIIETD GSSYRKAGAM MMINDLGQYF GLLSGGCLES
DIMLQARRCW DSGRNRIVEY DMREEEDLAW KLGIGCGGMV RILLQPVDEA NQYLQLDSLY
ALLESNQTAE YCQVINDQVP LNTLKTLTLK QAAPEQAKSI EGALKKADTD RKTETQQGVF
KQYLKPAPHL AVFGGGVDAR PVVAIATQLG WQVTLVDPRT SYARNGHFDN SVSVVRDAIE
SLEQNRWLQQ IDMAIIMTHN IKLDAQSLAL VQKSSAKYVG MLGPIHRTDR VLDLIPTTRE
QLVKPLANPV GLRLGGELPE SIALSMLSEA HAFIEQQNGL SISGILRQ
|
|---|
| |