| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2419 |
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| Symbol | |
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| ID | 4174168 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2943043 |
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| End bp | 2944509 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638055430 |
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| Product | major facilitator transporter |
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| Protein accession | YP_661989 |
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| Protein GI | 109898734 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2223] Nitrate/nitrite transporter |
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| TIGRFAM ID | [TIGR00886] nitrite extrusion protein (nitrite facilitator) |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGTTG AGAAATTTAA TTTGCTGTCT TTCACCGGCA AAATGAAAAC CCTACATCTA
TCCTGGATAG CCTTTTTTAT CACATTTATG GTGTGGTTCA ATATGGCACC CCTAAAAGGC
GCTATTGTCG ATGGTGTAGG CCTGACTCTC AGCGAATGGA AAACCCTGCT CATTATCAAC
GTTGCGTTGA CGATCCCTGC GCGCGTGATT ATCGGCGCGC TAACCGATAA GTTCGGGCCA
CGAATTGTTT ACTCTGCATT AATGGCAATA TGCTCAATAC CCTGTTTTAT GTTTGCTCTG
GCTGATAGCT TTACCCAGCT GCTTATCGCG CGTTTTGCAT TAGGGTGTAT TGGTGCAGGC
TTTGTTGTGG GAATTCGAAT GGTGAGCGAA TGGTTCCCAC CCAAAGAGCT TGGCACGGCC
GAAGGCGTTT ACGGAGGTTG GGGCAATTTT GGTTCAGCGG CTGCTGCTTT TACCTTGCCC
ACTATAGCTA TTTTGTTTGG TGGCGAAGAC GGCTGGCGCT ATGCAGTAGG CATCACCGGG
CTGATGAGTT TATTGTTCAG CTTTGTTTAC TATAAAAACA CCACCGATAC CCCGAAAGGT
TCTACTTATT TCCGCCCTAA AAACTTAGGC GGAATGGAAG TCACAAGCGT AGGTGACTTT
TACTTGCTGC TGGTGATGAA AACACCTATG TATCTGGCCT TAGCGCTACT TAACTGGAAG
CTTTCACCGC AAGGCGTATC GCTATTAGGT GAAGGTGTTG CATTAGCAAT ATATCTGGGT
CTAAGTGCAT TGTATGTTTA CGATGCGTAT CTTACCTACA AGGTCAATAA AGACTTATTT
ACTACCCCGG TTGCCGAGGT ACATCGTTAT TCTTTTAGGC AAGTGGCGGT ATTGAACATT
CTGTATTTCG CCACGTTTGG CTCTGAGCTA GCGGTGGTTT CTATGCTACC GGCATTTTTC
GCCGAGACCT TTGAGCTCAG TATGGCGACG GCGGGTTTAT TAGCGGGTAT GTATGCGTTC
ATGAATTTAA TGTCGCGTCC TGGTGGAGGC CTGATTTCGG ACCGCTTCGG GCGCAGAAAA
ACCCTACTTA TTTTAACCGC GGGATTAGCA GCGGGTTACT TTTGCTTGAG CTTGATTGAT
GCCACATGGC CGATTTGGTT GGCGGTGGTT GCGGTTATGG CATGTTCCTT CTTTGTCCAG
TCAGGGGAAG GGGCGGTCTT TGCCGTGGTT CCTTTGATAA AACGTCGTTT AACGGGGCAA
ATTGCCGGTA TGACAGGAGC CTACGGGAAT GTCGGAGCGG TTGTTTATTT AACGGTTTAC
TCTGTGGTTG ATACGTCCAC TTTCTTTGTG GTCATTGCGT GCACGGCTGT GCTTGGGTTT
GTGGCATTGT TGTTTATGAA AGAGCCACAA GGAGCGATGA CGGAAGTGCG CGAAGATGGT
AGTGTCGAGC TTATCAACGT TACATAA
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| Protein sequence | MSVEKFNLLS FTGKMKTLHL SWIAFFITFM VWFNMAPLKG AIVDGVGLTL SEWKTLLIIN
VALTIPARVI IGALTDKFGP RIVYSALMAI CSIPCFMFAL ADSFTQLLIA RFALGCIGAG
FVVGIRMVSE WFPPKELGTA EGVYGGWGNF GSAAAAFTLP TIAILFGGED GWRYAVGITG
LMSLLFSFVY YKNTTDTPKG STYFRPKNLG GMEVTSVGDF YLLLVMKTPM YLALALLNWK
LSPQGVSLLG EGVALAIYLG LSALYVYDAY LTYKVNKDLF TTPVAEVHRY SFRQVAVLNI
LYFATFGSEL AVVSMLPAFF AETFELSMAT AGLLAGMYAF MNLMSRPGGG LISDRFGRRK
TLLILTAGLA AGYFCLSLID ATWPIWLAVV AVMACSFFVQ SGEGAVFAVV PLIKRRLTGQ
IAGMTGAYGN VGAVVYLTVY SVVDTSTFFV VIACTAVLGF VALLFMKEPQ GAMTEVREDG
SVELINVT
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