| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2405 |
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| Symbol | |
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| ID | 4174153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2927780 |
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| End bp | 2929111 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055416 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_661975 |
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| Protein GI | 109898720 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACGC CAAACACTGG GCGCGCAAAA AATGATGGTA TTTCAGATAC CAGCGCTCAA
GACACAATAA TTCAAAAAAA GAAGTCATCT AATGCACGGT GGATAGCGGT GTTGAGCGTT
ATCTGCGTAC TCATTCTATA TTGGGCGGTT GCCCCAGCAG TAAACAGTTG GCAATCATCC
GACACCAGTA TTTCCGCCAA ACGCATTCAC CTAGGCAAAG TTGTTAGGGG TGATTTAGTG
CGTGATTTAT CCGTTCAGGG GCGGGTTGTA GCAGCAGTTA GCCCGCGTTT GTATAGCCCA
GCACAAGGCA CGATAAACCT ATTGGTAGAT GCAGGGGATT CTGTCATCAA GGGGCAAGTT
GTCGCCAGTG TCGATAGTCC AGAATTAACT AACGAGTTAC AACAAGAGGA ATCAAGCCTA
CAAAAGCTCA AAATGGAGCT TGACCGCCAG CGAATTCAAG CTAAAAAGCA AGCACTGAAA
AATCAAAAAG CGGTGGACTT AGCCAATGTT GCCCTTGTCG CGGCTGGCCG TGAAAAGCGT
CGAGCAGATA AAGCCTTTGG CACCCAATCT ATTAGCCAAA TAGATTTCGA AAAGGCCCAA
GATGAGCTCG AAAATGCCAA GCTTGTGTTT CAACATGCCA AGCAAGATGC CGCTTTGAGC
AAAGAGAGCT TGGCGTTTGA AGTGCAATCA AAACAGCTAT TAGTAAAGCG CCAAGCGTTG
TTAGTCAGCG ACTTGGCTAG GAAAGTCGAC ACACTTGACG TGCGCTCACC TGTTAGCGGC
ATTGTAGGCA ATTTAGCGGC CCAGCAAAAA AATCAGGTAG CAAAGAATCA AGCGATTTTA
AGTGTGGTTG ACTTATCTGA GTTCGAACTC GAAGTGGATA TTCCAGAAAG TTACGCCGAT
GACTTAGCGA TAAACATGTC AGCGATTGTC AATATCAACG GTGATGAACA CCTTGCCACA
TTAGTCACTA TTTCCCCAGA AATCGAAAAT AACCAAGTTA CCGGACGGGT CCGCTTTGCC
AATAAAGACG CTCAAGGCAA TGCGCTAATT CAACCCCAAG GCTTACGCCA AAATCAACGC
TTAACCACGC GTATTTTGAT GGACAAACGT CCTAATGTAT TGATGCTATC TCGCGGTCAA
TTTTTAGAAA GTGGCTCAGG ACGCATTGCC TATGTCGTGG AAGGTAACTT AGCCAAACGT
ACCAATATTG TCACTGGCGT ACGCAGTTTA TCCAATGTCG AAGTATTGTC GGGTCTAACC
GCTGATCAAC AGGTAATCAT ATCAAGCACT GAACAATTCA ATGATGCGCA AACCGTGCTT
ATTACTCAGT GA
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| Protein sequence | MNTPNTGRAK NDGISDTSAQ DTIIQKKKSS NARWIAVLSV ICVLILYWAV APAVNSWQSS
DTSISAKRIH LGKVVRGDLV RDLSVQGRVV AAVSPRLYSP AQGTINLLVD AGDSVIKGQV
VASVDSPELT NELQQEESSL QKLKMELDRQ RIQAKKQALK NQKAVDLANV ALVAAGREKR
RADKAFGTQS ISQIDFEKAQ DELENAKLVF QHAKQDAALS KESLAFEVQS KQLLVKRQAL
LVSDLARKVD TLDVRSPVSG IVGNLAAQQK NQVAKNQAIL SVVDLSEFEL EVDIPESYAD
DLAINMSAIV NINGDEHLAT LVTISPEIEN NQVTGRVRFA NKDAQGNALI QPQGLRQNQR
LTTRILMDKR PNVLMLSRGQ FLESGSGRIA YVVEGNLAKR TNIVTGVRSL SNVEVLSGLT
ADQQVIISST EQFNDAQTVL ITQ
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