| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2402 |
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| Symbol | |
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| ID | 4174150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2923229 |
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| End bp | 2925403 |
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| Gene Length | 2175 bp |
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| Protein Length | 724 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638055413 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_661972 |
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| Protein GI | 109898717 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000227129 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACTTTT TCATGACCCT AAATGGATAT TCAATGCGGT ACACCTGTTT AACACCTATC
AGCTATTTAT CAATCCTCAG CGTTTTAGTT AGCACAGCAC TTCAGGCTCA AAGTAACACG
CAAAACGATA ACCCAACTAT CGAGCGTATG ATAGTGACGG GTAGCCGTAT TATGGAGAGC
ATTGATGAAG TGCCAGCATC AATCGTGATC ATTACCCAGC AACAAATTCA AGATCAGTTA
AAAGTAACCA GTGAGTTACA GTCTCTACTA TCAACACTTG TTCCAGGTCT AGCACCATCA
ACTGGCACGT CTAGTAATTC AAGCCAAACA CTACGAGGCC GCGCCCCCTT GATCATGATT
GACGGCGTGC CTCAGTCCAC ACCATTACGC AACGGTTCAT TGGGAGTACG CAGTTTAGAT
GCTAGCACCA TTGAGCGTAT CGAAGTCATT AAAGGGGCAA CCTCGGTATA CGGCAACGGC
GCTGCTGGGG GGATTATCAA CTACATCACT AAAAAAGCGG CCAGTGATAA AGCGATGGCC
GGTCACGTTA CCATTTCTTC ACGTTTTAGT GCGGTAAAAC TCGAAGACAC CTTAGGTAGT
CGGGTGGATG CGGGCATGAA TGGGCAGCTA AATAAATTTA GCTATGTACT TAATGCAAGC
TATGAAGAAA ACGGCGTTCA ACGGGATGCA CAAGGCGATA TTCTCGGTCT AACTTATGGG
CTATCGGATA CTAATTCGCA AAATTATTTT ACTAAATTTG GTTATCAGTT TGATGACGAG
AAGACGCTAC AACTGACCTA CAATTATTTT AAGTCAAAGC AAGATACTGA CTTAATTAAT
GTGGTTGGCA ATATCAATTC AGGCGATAAA ACGTATGCTA TTGAATCCCC CGACGGCTCG
TCTATCGTCG GTGAACCTCA AGGCCCAGAA AACCACAATG TCATGCTTAA GTACTCAGAT
GACGAGATAT TTAGTCAAAC CCAATTAGTG GTCGATGCAT ACACCCAGCG GATTGAAAAT
GTTTTCTTCT TTTCGACAAA TCTAGCCAAC CCAGAACAAG GATTTGATGG AGGCCAATCC
ATTATAGAGT CTGAGAAAAA AGGCCTACGG GCCACATTTA ACAGCCAGTT TACCTTGCAG
GACATTGATA CCACGTTAAT TTACGGCATC GACGCATTAA ACGATGTTAC CTCACAGCCA
TTAGTCGACG GCCGTGTATG GGTGCCTGAA ATGGATATGG AAAACATCGC TGGGTTCGTG
CAAGGCAAAT GGATTGTAAA TGATGACATT ATTATCAAAG CCGGCGTTCG TCATGAAAAC
ATTGATTTAA AAGTGGCTGA TTTTAGCACC CTTCGCTTGT GCCGCACGGC CGACCAATGC
TCAGTCGCCT TTGACGTCGT CGGTGATACC CTCAATTACA AAGCCACTAC CTACAATGCA
GCCATTCGCT ATAACTTAAG TGATGCATTT AGACCCTTTA TCAGTTATTC GCAGGGCGCA
GACATATCAG ATACCGGCCG CCTGCTGCGC ACTGCAACCG TCACAGACAT CGCCCTTATT
CGTACCCAAG CCTCAATTAT TGATAACTAC GAACTCGGTT TTACGTCTGA AATCGACGCC
CTACGCGTCG AGTTTTCCGC CTATCGCAGT ACGTCAGAGT TAGGCACGAC AAATTCTTAT
GATGCTGAGA CCGGGGTATA TTTACCCGTT CGTGCCCCAC AAGAAATATA TGGCTACGAA
GCGTTGGCCA CTTATAAAGT GCAGTCCAAT TTAGACCTGT CAGCGACTTA CTCTTGGGTT
GAAGGTAAAA ATACTGAATT AGATGTGTAT TTAGGAGGTA AAGATATTGG TGCTCCAAAA
GGCACCTTTA ATGTAAATTG GCAACCCGTT GATGGTGCTC GCTTGGCACT AAATTACTTA
TACGTAGGTT CACGAAAACG CTTTGGTCAA GTTGATGGCG AATATATTGG CGATCAGGGG
CCGGTTGATA GTTACCAGTT GATCAATATT AACGGCAGTT ATGATTTAGG TAATCAATGG
CAAGTATTTA TGGGCATTGA GAATCTGTTG AACAATGATT ACTACCCTGC TCGCTCACAA
GTCTATACCT ACGACGGATA TAACCACAAA GGCTTAGGAA TGACCGTTAA CTTTGGCGCG
ACTTACCAAT TTTAA
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| Protein sequence | MHFFMTLNGY SMRYTCLTPI SYLSILSVLV STALQAQSNT QNDNPTIERM IVTGSRIMES
IDEVPASIVI ITQQQIQDQL KVTSELQSLL STLVPGLAPS TGTSSNSSQT LRGRAPLIMI
DGVPQSTPLR NGSLGVRSLD ASTIERIEVI KGATSVYGNG AAGGIINYIT KKAASDKAMA
GHVTISSRFS AVKLEDTLGS RVDAGMNGQL NKFSYVLNAS YEENGVQRDA QGDILGLTYG
LSDTNSQNYF TKFGYQFDDE KTLQLTYNYF KSKQDTDLIN VVGNINSGDK TYAIESPDGS
SIVGEPQGPE NHNVMLKYSD DEIFSQTQLV VDAYTQRIEN VFFFSTNLAN PEQGFDGGQS
IIESEKKGLR ATFNSQFTLQ DIDTTLIYGI DALNDVTSQP LVDGRVWVPE MDMENIAGFV
QGKWIVNDDI IIKAGVRHEN IDLKVADFST LRLCRTADQC SVAFDVVGDT LNYKATTYNA
AIRYNLSDAF RPFISYSQGA DISDTGRLLR TATVTDIALI RTQASIIDNY ELGFTSEIDA
LRVEFSAYRS TSELGTTNSY DAETGVYLPV RAPQEIYGYE ALATYKVQSN LDLSATYSWV
EGKNTELDVY LGGKDIGAPK GTFNVNWQPV DGARLALNYL YVGSRKRFGQ VDGEYIGDQG
PVDSYQLINI NGSYDLGNQW QVFMGIENLL NNDYYPARSQ VYTYDGYNHK GLGMTVNFGA
TYQF
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