| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2292 |
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| Symbol | |
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| ID | 4172446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2794171 |
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| End bp | 2795244 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055301 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_661863 |
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| Protein GI | 109898608 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCAA CACATTTATT ACTCACGTTA GCACTGGCTC TAGGCCTCAA TGCGCCAACC
AGTGCCGCCG ATGGCAAAAA GTATCGCTGG CGCCTAGCGG AAACTTGGGG CCCTAACTTC
CCCATATTCG GTGATGCTAG CAAAAACATG GCAAAAATGG TCAAGGAGAT GTCTGACGGG
CGTCTAACCA TTCGCATCGA TTCAGCCAAC AAACATAAAT CAGCGTTAGG CATTTTCGAT
TTTGTAAAAA GCGGCCAATA CCAAATGGGT CACTCGGCAT CTTATTATTG GAAGGGCAAA
GACTTTAACA CCATGTTTTT TACCACAGTG CCGTTCGGTA TGACCGCCCC TGAGCAATAT
GCCTGGTTCT ATTATGGTGG CGGTATGGAG TTGATGAAAG AAACCTATGA TCAATACGGT
ATATTGTCGT TTCCTGGCGG TAACACTGGC GTGCAAATGG GTGGTTGGTT CAGAAAAGAA
ATTAACACTG TTGAGGATTT AAAAGGACTT AAGATGCGTA TTCCTGGTTT CGCCGGTGAA
GTACTGGCTA AGCTTGGAGC AAGTCCGACG AACATCCCGT CTGCCGAGCT TTACACAGCA
TTAGAACGTA ACACCATTGA TGCCTTAGAA TGGGTTGGCC CGTCTCTTGA TTTACGTATG
GGCTTTCACA AAATAGCGCC TTACTACTAC ACCGGCTGGC AAGAGCCCGC AACTGAACTG
CAGTTTATGG TCAATCAAAA AGCCTATGAT TCTTTGCCTG CTGATCTACA AAAAATACTC
ACTGTGGCCA TGAAAACCGC TGCTTACGAT ATGTATTCAC AGTCTACCCA TGAAAATGGT
GTGAACTTAA AAGCCCTGCA AAGCGAATAC CCGAATGTGA AAATTCGGAC CTTCCCGCAA
CCAGTGATGA ATGCCATTCG TGACGCGAAT GACGAGCTAT TGGCAGAGTT TGCAGCAAAA
GATAAAGAAA CAGCCAAAAT ATTGAAGTCC ATCAAGACTT ACCAAGAGCA GGTACGCGCT
TGGACTAAGT TCGCCGACCA AGCCTACCTA GAAAGCTTCG AGTCAAACGA GTAA
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| Protein sequence | MKATHLLLTL ALALGLNAPT SAADGKKYRW RLAETWGPNF PIFGDASKNM AKMVKEMSDG
RLTIRIDSAN KHKSALGIFD FVKSGQYQMG HSASYYWKGK DFNTMFFTTV PFGMTAPEQY
AWFYYGGGME LMKETYDQYG ILSFPGGNTG VQMGGWFRKE INTVEDLKGL KMRIPGFAGE
VLAKLGASPT NIPSAELYTA LERNTIDALE WVGPSLDLRM GFHKIAPYYY TGWQEPATEL
QFMVNQKAYD SLPADLQKIL TVAMKTAAYD MYSQSTHENG VNLKALQSEY PNVKIRTFPQ
PVMNAIRDAN DELLAEFAAK DKETAKILKS IKTYQEQVRA WTKFADQAYL ESFESNE
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