| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2236 |
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| Symbol | |
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| ID | 4172388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2710968 |
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| End bp | 2713148 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638055244 |
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| Product | formate dehydrogenase |
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| Protein accession | YP_661808 |
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| Protein GI | 109898553 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGCAC AGCCGCAAAA ACACTTTTCA ACCTGTACCC TATGCGAAGC CATGTGTGGC
ATTGAAGTGA CCACAGTGGA ACGTGAAATT ATCTCCATTG CTGGGGACAA AAAGAACCCC
TTTAGCGAAG GTCACGTATG CCCTAAAGCG GCTGCCCTTA AAGATTTATA CGACGATCCA
CAACGTTTAC GCCAACCTAT GCGTAAAACA GCCTCAGGCT TTGAACCTAT TGGCTGGGAA
GAAGCACTAG ATACGGTCGC CGAAAAATTA CATGGCATTC AACATAAGCA CGGTAAAGAT
GCAGTTGGGG TCTACCTAGG TAACCCAAAT GCCCACAATA TGGGCAGCAT CTTATTTGGT
CCGTATTTCT ATCGCGCCTT GAACACCCAT AATCGCTATT CTGCGACCTC TGTTGATCAA
TTGCCTCATC ATATTGTGAG TCGACAGATG TTTGGGCATC AGCTGCAAAT TCCAATTGGT
GACATTGATC ACACCGATTA TTTCATGATC ATAGGTGGTA ATCCTCTTGC TTCAAACGGC
AGTATCATGA CCGTGCCGCA CATTAAACGT CGCTTGAAAG CGATCCAAAA ACGTGGCGGC
AAGGTGGTGG TGATCGATCC TAAAAAATCA GAAACGGCAG ATATAAGCTG CGACCATCAC
TTTATTAAAC CAGGTAGTGA TGTATTGCTG ATGTTAGCCA TGTTACATAC GCTATTTGCC
AAAGGCTTAG TGGATGCTGG AGAGCTACTA GAGCACGCTC CGGATTTACT GCAAGTTGAA
GCATATGTAG AATCGTACTC ACCAGAGCGA GTGGCAAAGA GAGTAGGGAT AAGCAGCGAA
GAAATAGAGA CGATGGTGAG TGAATTTTGC GCAGCAAAGT CGGCTTTTTG TTACGGCAGA
ATGGGCGCGA GTGTGCAAGT CTTTGGCACG TTGACTCAGT ACCTTATTAT GTTGTTCAAC
ATGCTTTCCG GTAACTTCAA CCGCCGAGGC GGTATGATGT TCACCCAACC AGCGGCAGAT
ACTTTACCTC ACTCTGGGCG TGGCACCATG GGTAAGTACA GCTCGCGCGT ACGTAAGTTG
CCAGCCTTTG CGGGGGAATA TCCTGTCGCT GCATTGTCAG AAGAAATCAC CACCCCAGGG
GATGGGCAAA TTAAAGCCAT GGTGATAGGT GGGGGCAACC CGGTACTCAC CACATCAAAT
GGCAAACAGC TAGATAAGGC CTTTGAGCAA CTAGAGTTTG TGGCGGCGGT AGATTTCTAC
ATTACCGAAA CCAGTCGCCA CGCGGATATT ATTTTGCCAC CCGTCACCGC TCTAGAGCGG
GATCATTACG ACGTGGTATT TCATAATTTC GCGGTGCGTA ACAGTGCGAA ATTTTCACCT
GCATTATTTA GCCAACCAGC GGATACCAAA ACAGATTGGC AAATATACCT TGGCCTAGCA
GAGCGCATCG ATCACCTAAA TGGTAAAGCC ACTGAGCATT ATGCCAAACT GTGGGAAAAA
GAGCCTACTG GGGTGGTGGA CGACATGCTC AAATCCGGTC GTTACGCCAA TGGCGAGCAC
GATATTAGTA TTCAAACCTT GCGCGATCAG CCTCACGGCA TCGACTTAGG CCCTTTACAA
CCTGAGTTAC CCGGGGCTAT TTATCACACA GACAAAAAAA TCAGCATGGC GTTTGATTAC
TTCATGGCTG ATTTGCCTAG AGTTGAGCAC CATTTTTTCA GCGATTCGTC TCCCCTAAAT
GCTCGTTCAG CAGCTACGTT AGATTTGATT GGTCGCCGTC ACTTGAAATC AAATAACTCT
TGGCTACATA ACAGCCCAAG AATGATGAAA GGCGTGAAGA GCAATCAAAA AGGCCAAAAC
CCCCGTTGCA GTGCGCAAAT ACATCCAGAT GATGCAGCAC GGTTTAATAT TAAAGATGGG
CAGTTTATCA CTGTTACATC CAGGGTAGGC CAAGTGGAAA TTGCCGCTGA GCTAACTGAA
AAGATCATGC CTGGCGTGAT TTCTATCCCT CATGGCTGGG GTCACAATAA AGCGGGTAGT
AGCTGGTCGT TAGCTGAGCA AAACAGTGGC GTAAGTGTCA ACGATTTGAC CGATGAAATG
TGCCTCGATG AATTGTCTGG CAATGCAGTG CTTAATGGCG TGCCAGTGAC CATTGCTGCG
CTTGAAAGCC CACCAGTATA A
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| Protein sequence | MQAQPQKHFS TCTLCEAMCG IEVTTVEREI ISIAGDKKNP FSEGHVCPKA AALKDLYDDP
QRLRQPMRKT ASGFEPIGWE EALDTVAEKL HGIQHKHGKD AVGVYLGNPN AHNMGSILFG
PYFYRALNTH NRYSATSVDQ LPHHIVSRQM FGHQLQIPIG DIDHTDYFMI IGGNPLASNG
SIMTVPHIKR RLKAIQKRGG KVVVIDPKKS ETADISCDHH FIKPGSDVLL MLAMLHTLFA
KGLVDAGELL EHAPDLLQVE AYVESYSPER VAKRVGISSE EIETMVSEFC AAKSAFCYGR
MGASVQVFGT LTQYLIMLFN MLSGNFNRRG GMMFTQPAAD TLPHSGRGTM GKYSSRVRKL
PAFAGEYPVA ALSEEITTPG DGQIKAMVIG GGNPVLTTSN GKQLDKAFEQ LEFVAAVDFY
ITETSRHADI ILPPVTALER DHYDVVFHNF AVRNSAKFSP ALFSQPADTK TDWQIYLGLA
ERIDHLNGKA TEHYAKLWEK EPTGVVDDML KSGRYANGEH DISIQTLRDQ PHGIDLGPLQ
PELPGAIYHT DKKISMAFDY FMADLPRVEH HFFSDSSPLN ARSAATLDLI GRRHLKSNNS
WLHNSPRMMK GVKSNQKGQN PRCSAQIHPD DAARFNIKDG QFITVTSRVG QVEIAAELTE
KIMPGVISIP HGWGHNKAGS SWSLAEQNSG VSVNDLTDEM CLDELSGNAV LNGVPVTIAA
LESPPV
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