Gene Patl_2228 details

Gene Information

• Locus tag: Patl_2228
• ID: 4172380
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 2695641
• End bp: 2696222
• Gene Length: 582 bp
• Protein Length: 193 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638055236
• Product: OmpA-like transmembrane region
• Protein accession: YP_661800
• Protein GI: 109898545

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAT TTACCCTTAC GACACTAGCA GCGACCTCTT TACTTATGAC TTCAGGTGCT 
TCCTTTGCTG CGACGAATGA TGGTGTTGAT CACCACGGTA TTTATGTAGG TGCCGGTTAT 
GGTTTAGTAG ATGTGGATGG AGATGAAGAC TTTGATCGTG ACGATAACGC AGCCAATGTG 
TATATCGGCA CACAGTTTAA CCAATACGTA TCGATTGAAG GTGGTTACAT TGATTTCGGC 
GAGTACGGTA ACGATACGTT CAACACCGAA GTTGACGGCT ATACACTTGG CTTAAAAGCG 
GGTTTGCCAG TCAACGAATA TATCACCGTG TACGCTAAAG GCGGACAGTT ATGGTGGGAC 
GCTGACATCA ACGCAGCCGG TGTGAATGAC AGCACAGACG GTGATGACTT GTTTTATGGC 
GTGGGTGCAT CTTTCGCTGT GTCTGAAGGT TGGGATGTGC GCTTAGAATA CACACGCTTT 
GACTTAGAGT TTGAACGTGA TGAAATCGGC ATTTTGTCAG AAATCGACAG CTTCGACAGC 
GATGTTGATT ACGCCAGTGT TGCCGTGCAG TACACTTTCT AA 

 

Protein sequence

MKKFTLTTLA ATSLLMTSGA SFAATNDGVD HHGIYVGAGY GLVDVDGDED FDRDDNAANV 
YIGTQFNQYV SIEGGYIDFG EYGNDTFNTE VDGYTLGLKA GLPVNEYITV YAKGGQLWWD 
ADINAAGVND STDGDDLFYG VGASFAVSEG WDVRLEYTRF DLEFERDEIG ILSEIDSFDS 
DVDYASVAVQ YTF