| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2225 |
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| Symbol | |
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| ID | 4172377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2690697 |
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| End bp | 2693135 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055233 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661797 |
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| Protein GI | 109898542 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.946751 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCATC CCTTATTTAA AAGCTCAACC TTGAGCAAAG CTGTTTTGTT AGGATTAGCC
ATGTCGCTAA CTCCCACCAT ATCGGCTCAA GAATCGGCAA CTCAGGAAAC CGCCGATGTA
GAGCGAATTG AAGTAACGGG ATCACTAGGT AGTCTACCTG GTCAAGGCGT AGAAGCCGTT
TTCGGCTTCG GTAAGTCAAT TTTGGAGACG CCCCGTTCAG CATCTACCAT CAGTGATGAA
ATGCTAGAGC GCTTTGCTGT CACCGACATA GACGATTTAG TTGCCTTCTC GCCTGGTACG
TTTACTCAAT CATTTTTTGG TGTCGCAGGC TCACTTGACG TGCGTGGTAC GCCAGGCGAA
ACGTATTTTC GCGGCGTTAA GCGCTTAGAC AACCCAGGTA ACTATCCGAC TCCTATTGGT
GCATCAAGCC GCATTGACAT TGTACGTGGC CCTGCATCTC CAATTTATGG CCCAGCCAAA
ATCGGTGGCT ACTTAAACTT TAATCCCAAG TCAGCACGCG CCAGTGGTGG CCAGTATCTT
GAAGAAAACG AAGGCGCTTT TTCCTATACC TTAGGGTCAT GGGATAAAAG TGTCATGACT
GCAGAAATCG GCGGCCCTGC TACATTGGGC GGCAAAGAAG CAGGTTTCTA TTTGTACGGC
GAGGTTGAAA ATTCAGGTAG CTATTATGAA AACTCAGGTA CCGACCAAAC CGTGCTACAA
GGCTCATTCA ATATCGATGT AACGGATAAC CTTCGTTTCG AATTCGGCGG TATGTACCAC
GATTACGACG GTAACCAAGT GGCTGGTTGG AACCGCCTAA CGCAAGATCT AATCGATAAC
GGCACCTATA TCACAGGCAC AGCGAAAAAC ATCGACACAG ATGGTAGCGG TGCAATTTCT
CATGAAGAAT ATGGCGCAGT GAACTTAGCA GGTAATGGTT TCTTTTACGC CGTGCCTTCT
TTGTTCACAG ATGCAGATGC TACTGATCTA ATGCAATTAG AAAATGTGGG TACGACCACA
TTGGGCCGCA ATCAAGTATT GGTCGCAGCT GATGATGTAT TGCAAAACAC GGTACAAACT
TTGTATTTTG ATGCGATTTA CTACAGCGAT AACGGCTGGG AAATCAAAAA TCAATTCTTC
TATGAAGACT ATGAGAACTT AAACGAGAAC GCCTACGGTT TCTCGCAGTT TCACAACAGC
TCAGTGGTTG AGAACAAACT TATCTTCTCT ACTGAATACG AAACCAACTC GTTGCTAGCA
CAATTTCAAG TATCACCGTC GATTCGTCAC ACCAACTTTT TACACGGTGA TGATTTCACC
TATGAGTACT TCAACCGTCG CGATTTAACC ATGGAATCCA CAGCGCTTGA TAGACGTGAA
ATGGCGACTC GTATCAACGA CAATTACGAT AACTACGATA AGGGCAATTA TACCGATTAT
GGTATCGCTG CCATGACAGA CTTAACGTGG GACTGGGGTT TGAATATCGT ATTAGGTCTG
CGTTACGACA CCATCGACAT AGAAACAACA AGTCGCGGTG ATTTATTGCT CGAAAAAGGT
GACATTCTGT CAACCAGTGA AACGGTTGAC GGTACGTCAT GGAATACCAG TATTTCATAT
AAAACCGAGT TTGGCTTGAT CCCCTATGTG ACACTGGCTG AGCAAGCAAC TTTAGTGGCC
GGTCAAGGTG CGGAAATTGG CTACGGTCAG TTAATCGATG ATGAAGGCAA TAGCTACAAC
GGCGCATTTG ATACATCTGA ACTCACTGAG TTTGGTGTAA AAGGTTCGTT CTTAGACGAT
TCGTTATATT TCGCCTTGTC TGTATATGAA CAAGAGCGTT CTGATTTTAA CGCACAAGCA
ATTGTGACCA ACGCTACCAC GCAAAACAAA GGTACCGAAT TTGAACTACG TTGGGTAGTG
AACGACCAAC TAGTAGTCGG CGCCGGTTAT ACCAAAATGA AGGTGTATAA CTTAACCGCG
TACAACGACG GCAACGGTGG TTCATTGTTC GGTTTCTTAG GTGCTGAAGA TTTAACCAGC
TTAACTGACC CATCATTGGT GTTTGGTGGT AACCCAGTCG GTTTAACACT GATCCCTGAA
GGTGCAAGTA AAGAATCAGC CAGAAAAGCC GGTATCCCTG AAAACATCTA CACGTTAAAC
GCTACTTATG ACTTCTTAAA CGGTTATGCG GCGAGTGCCA GCATTGTGCG TGCTGATGAG
ACTTACTCTA GCTTCTCACA ATCTGTGAAA CTACCTTCGT ACACCTTGGT GAATGCAGGT
GTGACATACA CCACAGATAC TTGGTCAGCC AGCTTGAACA TCAAAAACTT AACGGACGAA
GAGTACTATC GTGCTAACTT CCCTGATTTG TTTGGTGCAC AAATTGTGTT GCCTGAGCTA
CCACGTCACT ATCAAGCGTC GGTATCTTAT AAGTTCTAA
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| Protein sequence | MNHPLFKSST LSKAVLLGLA MSLTPTISAQ ESATQETADV ERIEVTGSLG SLPGQGVEAV
FGFGKSILET PRSASTISDE MLERFAVTDI DDLVAFSPGT FTQSFFGVAG SLDVRGTPGE
TYFRGVKRLD NPGNYPTPIG ASSRIDIVRG PASPIYGPAK IGGYLNFNPK SARASGGQYL
EENEGAFSYT LGSWDKSVMT AEIGGPATLG GKEAGFYLYG EVENSGSYYE NSGTDQTVLQ
GSFNIDVTDN LRFEFGGMYH DYDGNQVAGW NRLTQDLIDN GTYITGTAKN IDTDGSGAIS
HEEYGAVNLA GNGFFYAVPS LFTDADATDL MQLENVGTTT LGRNQVLVAA DDVLQNTVQT
LYFDAIYYSD NGWEIKNQFF YEDYENLNEN AYGFSQFHNS SVVENKLIFS TEYETNSLLA
QFQVSPSIRH TNFLHGDDFT YEYFNRRDLT MESTALDRRE MATRINDNYD NYDKGNYTDY
GIAAMTDLTW DWGLNIVLGL RYDTIDIETT SRGDLLLEKG DILSTSETVD GTSWNTSISY
KTEFGLIPYV TLAEQATLVA GQGAEIGYGQ LIDDEGNSYN GAFDTSELTE FGVKGSFLDD
SLYFALSVYE QERSDFNAQA IVTNATTQNK GTEFELRWVV NDQLVVGAGY TKMKVYNLTA
YNDGNGGSLF GFLGAEDLTS LTDPSLVFGG NPVGLTLIPE GASKESARKA GIPENIYTLN
ATYDFLNGYA ASASIVRADE TYSSFSQSVK LPSYTLVNAG VTYTTDTWSA SLNIKNLTDE
EYYRANFPDL FGAQIVLPEL PRHYQASVSY KF
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