Gene Patl_2220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2220 
Symbol 
ID4172372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp2683689 
End bp2684390 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content46% 
IMG OID638055228 
Producthypothetical protein 
Protein accessionYP_661792 
Protein GI109898537 
COG category[S] Function unknown 
COG ID[COG2968] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.932217 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAACG TGTTTGCTAT TGTTACTCTG TTGGCGTCAA GCGCCGCATT AAGTTTTAGT 
CCACTCAGCG CCGCCAGTGC TGAGGACAAG GTGCATCAAA TCAGCGTTAG TGGCCAAGCG 
AATGTGGCAA GTGTGCCAGA CCTGTTCCAG TTCAGTGTTT ATGTAGAGGA GCAAGGAGAG 
CGGGTTCAAA ATCTAAACAG TGTAGTCGCA GACAAAACCC AAACCATTAT CAGCAGTGTG 
TTGGCTTTTG GTGTTGACAA AAAAGACGTG CAATCAATGC GTGTTCAGCT TAATCCTTGG 
TACGAACACA GTAATAACCA ACGCATTCAA AAAGGCTTCA AGCTTTCAAG AGAAATTAAC 
TTCACCTTGC GCGATATTGC CCTGTATGAC CAAGTGATTG ATGCGGTATT AGCGACGGGA 
GCGAGCCGTA TTGATGGCTT CAATTATGTT GTCGAAGATC CACAGCCGCA GTATTTAGCG 
GCGTTAGAAT TGGCACTGAA GGACGCAAAA TTACGGGCCT CTCGTATGGC AAAAACCTTG 
GGCGCCAAAC TAGGTAAGGT TATATCAATC AGCGAAAATA GCGGCTATTC ACCCATGCCT 
AGAGGTCGTG AAGTGATGAT GATGAGCAAA TCAAGTGATT CACTACCAGG CCAAATTAAC 
ACCGCTGCGC AGGTAAACGT GACATTCGAA TTGGTTGAGT AA
 
Protein sequence
MKNVFAIVTL LASSAALSFS PLSAASAEDK VHQISVSGQA NVASVPDLFQ FSVYVEEQGE 
RVQNLNSVVA DKTQTIISSV LAFGVDKKDV QSMRVQLNPW YEHSNNQRIQ KGFKLSREIN 
FTLRDIALYD QVIDAVLATG ASRIDGFNYV VEDPQPQYLA ALELALKDAK LRASRMAKTL 
GAKLGKVISI SENSGYSPMP RGREVMMMSK SSDSLPGQIN TAAQVNVTFE LVE