| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2029 |
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| Symbol | |
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| ID | 4173903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2470148 |
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| End bp | 2471416 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055037 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_661601 |
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| Protein GI | 109898346 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.769975 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGATTG TCCTTTTGAC AACACACACC GTGGTAGTAG CACAAACAAA CAGTACCACC
AATCGAGAAA TGACGTTGCA AAGCGCCATA CAGCGTACAT TAACTAATTC GCCAGAATTG
CATGAGTTCA CATATAGGCA ACAAGCAGTT GAGGGGGAAA TTAAAACGGC GTCTCTCAAA
CCTGAGGTTA CAGCCGGTAT TGAACTAGAA AACTTCTTAG GTACAGGAGA TGTCTCAGGA
ACTAAGGACA CCGAGATGAC TCTCACATTG TCGTCGGTCA TTGAATTGGG CAATAAACTC
AACTCACGTA AGGAGTTTAC TAAGGCGCAA TCCACCTTAG TCGAAGCACA AAAACAAGTG
CAAACCTTGG ATGTTTTAGC TGAAGTGACA CGTCGCTACA TCGATGTCTT AGCGCAACAA
GCGCTAATTG ACGCGCAACA AGAGACAGAA ACTCTTGCCC GATATACCTA CCAAGCGGTC
ACAAAGCGTG TGGATGCGGG AGCATCTCCA GTATTTGAAC AGCAACGTGC TGAAGCTGCA
CTGGCAAGAG CTAGACTGGA TGTGGTGACG GCACAGCAGA CTAAGCAAGC TATGATAAAA
AGTCTGGCTA TTATGTGGGG GGAAAAAAAT CCTACTTTTA CTGGTGTTGA GGGTGACTTA
TTTACACTGC AATCATCTCC TTCATTAACC TCGCTTTTCA ACACACTATT GGACAGTCCC
AATCTTGAGG TCTATACGAA AGAATCGAGA TTGCAGGCAT CTCAAGTCCG CCTTACTCAA
GCAGCTAATC AATCAGATTT AAGCTGGACA GCAGGAATAA GACGTATTAA TGGGATTGAT
GATACCGCTT TCGTAGCAGG TGTCAGCATG CCGTTGTTTG CGGGAAATCG AAATATTGGT
GAGTATGAAA AGCAACGGGC TGTTCAAGGG CAATTGGAAC AACAAAAACA GTCTGCAACC
CAAAACCTTT ACCATCAACT AAATATGGCG CTAGTAGCGA GAAATAATGC GCTGCTCAAT
GTACAGACAC TACAAGACTC GATTATCCCG CCGTTAGTTC AAGCGCTGGA ATTGGTAGAG
CAAGCCTATA TCAATGGGCG TTTTAGTTAT TTTGAGTGGG TCAGTACCCG TCAAGAACTA
CTTAATGCCA AGCAAGCCTT AATTCAGTCT GCCAAACAAG CACATCAGCG GGGGGCGGAT
ATTGAATCAC TCACTGCGCA ACCGCTTGCT GATGCAAATG TCACATCTTC TTCGAGTAAA
AATCAATGA
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| Protein sequence | MMIVLLTTHT VVVAQTNSTT NREMTLQSAI QRTLTNSPEL HEFTYRQQAV EGEIKTASLK
PEVTAGIELE NFLGTGDVSG TKDTEMTLTL SSVIELGNKL NSRKEFTKAQ STLVEAQKQV
QTLDVLAEVT RRYIDVLAQQ ALIDAQQETE TLARYTYQAV TKRVDAGASP VFEQQRAEAA
LARARLDVVT AQQTKQAMIK SLAIMWGEKN PTFTGVEGDL FTLQSSPSLT SLFNTLLDSP
NLEVYTKESR LQASQVRLTQ AANQSDLSWT AGIRRINGID DTAFVAGVSM PLFAGNRNIG
EYEKQRAVQG QLEQQKQSAT QNLYHQLNMA LVARNNALLN VQTLQDSIIP PLVQALELVE
QAYINGRFSY FEWVSTRQEL LNAKQALIQS AKQAHQRGAD IESLTAQPLA DANVTSSSSK
NQ
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