Gene Patl_2025 details

Gene Information

• Locus tag: Patl_2025
• ID: 4173899
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 2467671
• End bp: 2468306
• Gene Length: 636 bp
• Protein Length: 211 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 638055033
• Product: cation efflux protein
• Protein accession: YP_661597
• Protein GI: 109898342
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG1230] Co/Zn/Cd efflux system component

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.82929
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGGTT GCGGTTGCGA AGTAGAAATC AAGAATTCGT CACAAAAGCG CATTTTGTAT 
TGGCTCCTAG GCATCAATGC GACGATGTTT CTTATTGAGA TAACTATAGG TATTTTGGCT 
GATTCCACCG CTTTGATAGC AGACTCGCTG GACATGCTGG CAGATGCAAT TGTGTACGGC 
ATAGGTATTT ATGCTGTGGG TCAATCTATA CTTTACAAAG CCAAAGCTGC GCAAATCAGT 
GGTTACTTTC AGCTGTTGCT GGGCGTGATC ATTCTCATTG ATATTACCAG AAGATTATTC 
TTGGGCAGTG AGCCTATCTC ATTATTAATG ATAGGAATGG GGTTCATTGC ACTCATTGCA 
AACGTCGCTT GCTTGGTGAT TATTCGTAAT CATAAAAACG ACGAAGTACA TATGCGAGCC 
AGCTGGATTT TTTCAGCTAA CGATGTCATT GCCAACATGG GTGTCATCAT CGCCGGTGTT 
CTAGTGGTAT GGCTTGATAG CAGAGTACCG GATCTGGTTA TCGGCTGTAT AGTGTCAATA 
GTCGTGCTAC GCGGAGCGTG GATGATCCTG AAAGACGCCA AGCAGGAAGC ACTTAATAAC 
GAAGTACAGA AAGGTAAAGC GGGTGATCCA CTATGA 

 

Protein sequence

MSGCGCEVEI KNSSQKRILY WLLGINATMF LIEITIGILA DSTALIADSL DMLADAIVYG 
IGIYAVGQSI LYKAKAAQIS GYFQLLLGVI ILIDITRRLF LGSEPISLLM IGMGFIALIA 
NVACLVIIRN HKNDEVHMRA SWIFSANDVI ANMGVIIAGV LVVWLDSRVP DLVIGCIVSI 
VVLRGAWMIL KDAKQEALNN EVQKGKAGDP L