| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1973 |
|---|
| Symbol | |
|---|
| ID | 4172108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2396475 |
|---|
| End bp | 2397740 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638054981 |
|---|
| Product | serine/threonine protein kinase |
|---|
| Protein accession | YP_661545 |
|---|
| Protein GI | 109898290 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTCA GTAGGCTAGC GTTGCTTTTT TGCAGTACAG CTTCTCTTTA TCATCTCTTT
ATCAGGTTTC TCATTTTGCA CACACTGAAT CAGCTTAAAA CCGGCCAACT TATTGGCACA
TCAAAACTCA CTCTATCTGA CAACCTCACG GAATTTCCTT TAGAGATTTT AACACTCGCT
GATACCTTGG AAGTACTTGA TTTATCAAAT AATAAATTGC GCCATCTACC CAATGAGTTT
GCCCAATTAA AAAATCTTAA AATTCTATTT GCCTCTAACA ACCAGTTTGA AGTTCTACCA
GACGTATTGG GACAGTGTGA AAATCTTGAA ATGGTCGGTT TCAAAGCCAA CAAAATCAAG
CGTGTGCCTG AGAACGCTTT ACCCATAAAG TTGCGCTGGC TGATTTTAAC CGATAATCAA
ATACATAGAC TGCCAAACTC GTTGGGTGAG CGACCTAGAA TGCAAAAGTT AGCCCTTGCG
GGTAATAAAC TCACGTCATT ACCTGAGAAT ATGAGCCAAT TGCACAATCT TGAGTTGTTG
CGAATTTCGG CGAATGATTT AGCGCAATGC CCAGACCAGC TATTAGATTT GCCCAGATTG
GCTTGGTTTG CTTTTGCGGG TAATCCATTT TCCGCAGCGG ATTTGCATAT TGAAACAGTG
CCTCATGTAC CCTCTACGAG CTACCAATTG CATGATGTGC TAGGGCAGGG AGCATCTGGC
GTAATCTCAA AAGCGACTTG GCGTAAAGCA CAACATGACA TGCCCGCAGA GGTGGCGGTT
AAAGTGTTCA AAGGCCAAGT CACCAGTGAT GGCTACCCGA AAGATGAGTT ACAGGTTTGC
CTGAAAGTGG GTCAACATAG CAATATAGTC AAACCGCTGG CACAGGTGAC AGAGCCTGAC
TACTTGGCGT TGGTGATGGC GTTAATCCCA GAGCATTTCC GTAATTTAGG CTTGCCCCCG
TCGTTAGACA GTTGCACTCG AGATACCTTC CCTGAAGGGT TTACATTGTC GTCTCAGCAC
ATTGAGAAAA TCATTTCTCA GATGCGAGAT GTGTATGAGC ATTTGCATAT AAACCAAGTT
TGCCACGGTG ATTTATACGC CCATAACACC TTATTTGATG ATGAGGGAAA TATCATATTC
GGTGATTTCG GCGCCGCGAG CATGTACCAC ATGTTAAGCG AGTCACAACA AAAGAAAATC
AAGCAAATTG AAGCTCGAGC ACTAGCTCAC TTTATAGAAG ACATCCAAAG TTTGAAAGTG
GGCTAG
|
|---|
| Protein sequence | MIFSRLALLF CSTASLYHLF IRFLILHTLN QLKTGQLIGT SKLTLSDNLT EFPLEILTLA
DTLEVLDLSN NKLRHLPNEF AQLKNLKILF ASNNQFEVLP DVLGQCENLE MVGFKANKIK
RVPENALPIK LRWLILTDNQ IHRLPNSLGE RPRMQKLALA GNKLTSLPEN MSQLHNLELL
RISANDLAQC PDQLLDLPRL AWFAFAGNPF SAADLHIETV PHVPSTSYQL HDVLGQGASG
VISKATWRKA QHDMPAEVAV KVFKGQVTSD GYPKDELQVC LKVGQHSNIV KPLAQVTEPD
YLALVMALIP EHFRNLGLPP SLDSCTRDTF PEGFTLSSQH IEKIISQMRD VYEHLHINQV
CHGDLYAHNT LFDDEGNIIF GDFGAASMYH MLSESQQKKI KQIEARALAH FIEDIQSLKV
G
|
|---|
| |