| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1971 |
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| Symbol | |
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| ID | 4172106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2393044 |
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| End bp | 2395425 |
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| Gene Length | 2382 bp |
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| Protein Length | 793 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054979 |
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| Product | agarase |
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| Protein accession | YP_661543 |
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| Protein GI | 109898288 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0111275 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCCA GTAAAAAGCT TTTGTTTGTT GCGATTGTAA CAGCGCTAAC TGGATGCAGT
GCGAGTGAAA CGAGTGACGA GGTTAGTCAC TCCTCAGCCG CAGAGGTGCA ACCAGTTGAT
CACATTGAGC AACAGGTAAA AACACTTAAA ACATTGTTTA CTGCCAAAGA TAGTGACTCC
CTCAAGCAGG TTAAATACAC AAATGCCAGC GGCACCGTGG TTGGTACATC AGGCGATTCT
CTCAAAGTAG TCTTTCATGG GAAAGAGAAT ATCAACAGTG CTGTTGAGTT TATCCCTGAT
GTTGCTTGGG ATTGGAGCGA TTTAGACGAT TTTAATATCG CTTTTGACAT CGGTAATGAA
GGAGAGCACT CAGTTCAGTT ATTCCTAAAT ATATCTGATA CCAATGGCGA TACGTATACC
CGTTCAGTCA GTGTGCCTGT TGGGCCACAA AGTACTTATT ATGCAAAAAT GGCGGGGCAC
GACCTCGCCA AATCAATCAG TGACGATAAG AACGAATTTA ATTTTACCTC GGGCTTACGC
TCTAACCCAG ACACGTGGCA TTCAGATGAC AAGCAGTTTA TCTCTTTGTG GGGTAAAAAA
AATCTTAAAC TCAGTGGCAT AAGCAAGATT TCGTTAAGCG TACAAAACAA TTTATTCGAT
AAACAAATCA CTATAAACGA TATTCGATTA CGCCAAAATC CGCCTATGGA TACGCTCTAC
CTTACGGGTG TGGTTGATCA ATTCGGGCAA AATGCAAAGC GCGAATTCGA CGGGAAAGTG
CACTCGTTAG AAGAGTTATA CAGCGCAAGA GATAAAGAGT TGAAAACCTT AGACGGAAAA
TGGAATGCGC CGCGCTCAAA GTGGGGCGGT TGGTTGAACG GACCTAAGCT GGAAGGCACG
GGCAACTTTC GAACAGCTAA ATATCAAGGC AAATGGAGCT TAGTTGACCC CGACGGTTAC
CTGTATTTTG CCACTGGTGT CGATATCATT CGCTTGGCTA ACTCGTCTAC AATGACCGGT
TATGATTTTC CGCCGGAGGT GTTAGTTAAA GCAGATAACG CTGATGTGAC GCCATCTGAT
TCTCAGGGCC TTAATCGCGT TGCTGACAGT GCCGTGCCAT CACGTTTTGT AGCATCTGAA
CTCAGAAAAG ATCTGTTCAC TTGGTTGCCA AGTTACGAGG AACCTATGGG GCAGCACTAT
GGTTACCGTA CTGGGGTTCA TTCAGGGCCA CTAAAACAAG GCGAAACCTA TAGTTTTTAT
GCAGCCAATT TAGATCGTAA ATACAGTGAA ATGACACCTG ATTACATGCA AAAGTGGCAC
GATGTGACCC TAGATAGAAT GCGTAATTGG GGGTTCACAT CCTTAGGTAA TTGGACAGAT
CCTGCATTTT ACGACAACCA GAAAGTACCG TTTTTTGCTA ACGGTTGGAT CATCGGTGAC
TATAAAACCG TCTCTAGTGG CGATGATTTC TGGGGCAACA TGCCGGATGT GTTCGACCCT
ACATTCAAAG AGCGTGCGTT GCATACTGTC AGCGTCATCG CACAAGAAGT GAAAAACACC
CCTTGGTGCG TGGGTGTATT TATCGATAAC GAGAAAAGTT TTGGCCGTAG TGAAACGCCT
CAGTCGCGCT ACGGCATCGT GTTCAATACC CTAAAACGCG ATGGTAGTGA AGTGCCGACT
AAGGCGGCGT TTACGACAAT GCTTAAAGAT AAATATGCCA GCATCGAGGC ATTAAATGCC
GCTTGGGGTA AAAACATTTC CTCTTGGTCT GAGTTTAATA AAGGCATTGA TTCAGTGCTA
GCGACTGATG AAACGCACGC CGAACAGCAA TTAGCTGATT ACAGCGATAT GCTGTATGCC
TATGCCGAAA AATACTTTTC AACAGTTGAT GCTGCTATGC AAACTTATTT GCCTAATCAT
CTCTATTTAG GGTCTCGCTT CGCGGATTGG GGCATGCCTA TGGAGGTGGC AAAAGCGGCT
ACTCAGTACG TGGATGTGAT GAGTTACAAC GTATACAAAG AAGGCTTACA TCCAAAGGGC
TGGGGATTTC TAAAAGAGTT TGACATGCCA TCAATTGTGG GCGAGTTCCA CATCGGAGCT
ACTGACAGCG GTTTGTTTCA CCCAGGCTTA GTACATGCTG CTAATCAGCA AGACAGAGCT
GATATGTACC AAGATTATAT GGGAACGATT ATTGATAATC CGTACTTTAT TGGTGCGCAT
TGGTTCCAAT ACATGGACTC GCCAATTACT GGTAGAGCCT TTGACGGCGA AAACTACAAC
GTAGGCTTTG TTAACGTGAC TGACACCCCT TATGCGCCTA TGGTCAATGC TGCCAAAGAC
CTACACAAAG GCATGTACGA ACGTCGTTTT ACATCTAACT AA
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| Protein sequence | MNASKKLLFV AIVTALTGCS ASETSDEVSH SSAAEVQPVD HIEQQVKTLK TLFTAKDSDS
LKQVKYTNAS GTVVGTSGDS LKVVFHGKEN INSAVEFIPD VAWDWSDLDD FNIAFDIGNE
GEHSVQLFLN ISDTNGDTYT RSVSVPVGPQ STYYAKMAGH DLAKSISDDK NEFNFTSGLR
SNPDTWHSDD KQFISLWGKK NLKLSGISKI SLSVQNNLFD KQITINDIRL RQNPPMDTLY
LTGVVDQFGQ NAKREFDGKV HSLEELYSAR DKELKTLDGK WNAPRSKWGG WLNGPKLEGT
GNFRTAKYQG KWSLVDPDGY LYFATGVDII RLANSSTMTG YDFPPEVLVK ADNADVTPSD
SQGLNRVADS AVPSRFVASE LRKDLFTWLP SYEEPMGQHY GYRTGVHSGP LKQGETYSFY
AANLDRKYSE MTPDYMQKWH DVTLDRMRNW GFTSLGNWTD PAFYDNQKVP FFANGWIIGD
YKTVSSGDDF WGNMPDVFDP TFKERALHTV SVIAQEVKNT PWCVGVFIDN EKSFGRSETP
QSRYGIVFNT LKRDGSEVPT KAAFTTMLKD KYASIEALNA AWGKNISSWS EFNKGIDSVL
ATDETHAEQQ LADYSDMLYA YAEKYFSTVD AAMQTYLPNH LYLGSRFADW GMPMEVAKAA
TQYVDVMSYN VYKEGLHPKG WGFLKEFDMP SIVGEFHIGA TDSGLFHPGL VHAANQQDRA
DMYQDYMGTI IDNPYFIGAH WFQYMDSPIT GRAFDGENYN VGFVNVTDTP YAPMVNAAKD
LHKGMYERRF TSN
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