| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1970 |
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| Symbol | |
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| ID | 4172105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2390983 |
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| End bp | 2392572 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054978 |
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| Product | sugar transporter |
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| Protein accession | YP_661542 |
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| Protein GI | 109898287 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.460324 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAATC AAGTTAGGCA TGTATTCTTT TGCGCAATCG TAGTGGCATT CGGAGGATTC
ATTTTTGGTT TAGATGCCGC GCTTATCTCA GGCACTGTGC GCTTTATTTC CGCCGAGTTT
GCCCTCTCTG ACTTGCAAAT TGGGGCTGTG GTCAGTGCAC CTGGTTTCGG TGTTTTATTT
GCGTTACTCA TTACTGGCTA TATTTGTGAC AAATATGGTC GCCGCCAAGC CCTGCTCATT
ATTTCTGTTT TATATATATT GTCTGCGGTA GCGTCTGTTG GTGCTATTTC CTTTGAGATG
TTGGTTACGG CTCGATTTGT TGGCGGGCTT GCGTTTACGT CGCTGTCAGT AGCGGCTATG
TATATTGGCG AAATTGCACC GCCAAAACTA CGCGGTAAAT TGGTGGCCAT GATCCAGATA
AATATCGTTA TCGGTCTCTC AGCCGCTTAT TTTGCCAATT ACATGATATT AAAGGTGTCG
CAATTAGAGA CCGACTGGGT CATGTCTCTT GGTATCAATA CCCATACTTG GCGGTGGATG
CTCGGCATTG AGATTATCCC AGCCATCGTA TGGCTATTCT TACTTATTAC GATCCCAAGA
AGCCCTCGAT GGTTGGTCAT GAACAATCGT TTGGATGAAG CAAAGCGTGT ACTGCATCAG
TTTTTGAATA ACGAAGAGGT CGAAAAAGAA CTGGTTCAAA TTCAGCACAG CGTCGATTTA
GGCGATAAAC ACGCTTTATC CACCGCTGAA GCCATAAAAG CCATGTTTGG CAGCAAAATG
CGTAAAGCCG CATTAATCGG TTTAACCATG GGGGTGGTGC AACAAATTAC CGGAATTAAC
GCGATCATGT TTTATGCCCC AACGGTCTTT GAGCAAGTCG GTTTGGGCAC CAATGCTGCC
TTTTTCCAAG CACTTATCGT CGGTTTGGTC AGCGTGTTGT TCACCATAGC AGCAGTGTTG
TTAGTCGATA GATTGGGCCG CCGTCCACTG GTGATTTACG GCCTTGCAGC GGGCACTATT
AGCCTATTTA TGTGTCACTA CGCTTTCAGT CAGGCCACTT ATATCCTTAC CCCTGAGCAG
ATTAACGCGT TTACCACTGA GCATGGCTTA GCCAGCATGC AGAATATGGT GTCCACTGCG
TTTTCATCTG ATATTGAATT TAAGAATATG CTGCAGTCGG TTATTGGTAT CGAAGAATTT
AGACGCCATG AAGGCCAGTT GATGCAAATG GCGACTAATG TGAACGCAAA CATGATCCTA
CTTGGCGTCA TGGGTTATAT AGCAGCTTTT CATTTCTCAA TTGGGCCGGT GATGTGGGTG
CTCTTTTCAG AGATATTCCC AATCGCTATT CGTGGAACCG CCATTCCCAT GTTTGCATTG
CTTGCTAGTA TTGTGAGTTA TTTAGTACAG CAGTTTTTCC CATGGCAGTT AAGCCATATG
GGGGCTAGTG ACATCTTCTT ATTTTACGCT ATCAGTGGTG CTATAGGTTT CGTGATCTTG
TTTAAGATCA TGCCTGAAAC CAAGAATAAG ACGATTGAAG AAATTGAACT CGATTTAGAC
AGCACAAAAG ATAAAGCGAG CGTGGTCTAA
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| Protein sequence | MNNQVRHVFF CAIVVAFGGF IFGLDAALIS GTVRFISAEF ALSDLQIGAV VSAPGFGVLF
ALLITGYICD KYGRRQALLI ISVLYILSAV ASVGAISFEM LVTARFVGGL AFTSLSVAAM
YIGEIAPPKL RGKLVAMIQI NIVIGLSAAY FANYMILKVS QLETDWVMSL GINTHTWRWM
LGIEIIPAIV WLFLLITIPR SPRWLVMNNR LDEAKRVLHQ FLNNEEVEKE LVQIQHSVDL
GDKHALSTAE AIKAMFGSKM RKAALIGLTM GVVQQITGIN AIMFYAPTVF EQVGLGTNAA
FFQALIVGLV SVLFTIAAVL LVDRLGRRPL VIYGLAAGTI SLFMCHYAFS QATYILTPEQ
INAFTTEHGL ASMQNMVSTA FSSDIEFKNM LQSVIGIEEF RRHEGQLMQM ATNVNANMIL
LGVMGYIAAF HFSIGPVMWV LFSEIFPIAI RGTAIPMFAL LASIVSYLVQ QFFPWQLSHM
GASDIFLFYA ISGAIGFVIL FKIMPETKNK TIEEIELDLD STKDKASVV
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