| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1924 |
|---|
| Symbol | |
|---|
| ID | 4172770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2330428 |
|---|
| End bp | 2331174 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638054932 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_661496 |
|---|
| Protein GI | 109898241 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA GTAAGCAAGT GTGGTTGTTT TTTTTATTGA TGTTTTTACC ACTAAACTTG
GTGGCCGAGT CCTATACGTC TCACTGTCGC AATCATCCCC CGGAACTATT TTTTGATGAT
GGTAAATGCC TCGGCGTCAT CCCTGAACTA GTAGACGATA TATTTCGCGA GCTCGGTCAT
GAAATAACGT GGTTAGAAGC ACCGTGGGGG CGCTCATACC GAGAGGCTAA AAAAGGCACC
GTCGATATAT TGATTCGGCA TTCTATGAAT CCCTCCAGAG AGCCTTTTCT ACGTGCTATT
CCCTATGGAT ATAATATTAG AAATCTAGCG TTTTATATGT CGCCTACCTT ATCTGCTGAC
ATCACCTCTT ATGCCGATTT AGCCAAGCTT AATGTAGGAG CCGTTAGAGG GGCATACTAT
TCGCCCCACT TTTCTAACCT TGACCCACTT GCCATGACCT TGGTTGGTCA GAGTGAGCAA
TTATTAGCCA TGTTGGAACG TGGTAGAGTA GATGTAGTGG TCACCTCCGA GACTCAATGG
GAAGGCCTAT TTAAAAGTCG TTTTAAAAAG GCGACCTTAG TGGATAGCTT CGAGAATGTT
TATTACATAA GCATTGCTAA AAACGCCAAA GCCAATGCCA TTTATGATGA TGTGGCAAGG
ACCATGTTGG AATACCGAAA AAGCGGTAAA ATAAACCGTT ATTTCGAAAA ATACGGGATA
ACGCCGCCAT TACAAAATTT TGATTAA
|
|---|
| Protein sequence | MKKSKQVWLF FLLMFLPLNL VAESYTSHCR NHPPELFFDD GKCLGVIPEL VDDIFRELGH
EITWLEAPWG RSYREAKKGT VDILIRHSMN PSREPFLRAI PYGYNIRNLA FYMSPTLSAD
ITSYADLAKL NVGAVRGAYY SPHFSNLDPL AMTLVGQSEQ LLAMLERGRV DVVVTSETQW
EGLFKSRFKK ATLVDSFENV YYISIAKNAK ANAIYDDVAR TMLEYRKSGK INRYFEKYGI
TPPLQNFD
|
|---|
| |