| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1920 |
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| Symbol | |
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| ID | 4172766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2326160 |
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| End bp | 2327200 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638054928 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_661492 |
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| Protein GI | 109898237 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGATC AGTTAGTACA GAACTATAAG TATCGCAGAG ATATCATGGT CGTGTTGCTT
ATGGTGACCT TTCTCGGTGG GGTTATTTTC TCGATAATCA ATTTTTATCG AGGTTTATGG
TCTCTTGCGT CTATTGAATT ATCCTACGGG GTATTTTCAC TTTGGCTTTG GTTTAGGATC
CAGAACACCA AGCACTTTCA GCGCTGGGTT ACCATTTATG TGGTGCCGTT TTTTATCATT
ATGATTTATG GGCTGTCACT GCCCCAATCA TCTGAATCTA TTTTCGTATG GATATTAACC
ATACCCGTTA TTTCATACCT TTTGATGGGC CGAGTCAGAG GGTTCTGGTT TTCAACGACT
TTCATTATTT GTGGTATTTT TGCCTATCAC TGGCGCTTTA TTCGCGAAGA CCACCTGTTG
TCACTCAATG TCGCTATATC CACCAACGTG ATATTGAGTT CTCTTTTAAT GATGGCGTTC
GCCCATGTCT ATGAACGGAC AAGAGAAGAG AACGAAGGGC GTCTATTATC GCTTGCCGGC
ACAGATCCAC TCACCGGCCT TGCGAATCGC ATGAAGCTCA ATGAAGGGTT TCAACAACTT
AGCGCCCTAG CCACTCGCCA CAATACACCT CTAACCGTTG TGTTGTTTGA TTTGGATTTA
TTTAAAACCA TTAATGATGT CCACGGACAT TCAGTAGGTG ATGATGCGCT TCGCCATGTG
GCGACATTTT TACGCAAGAA TACCCGTAAA ACCGACCTAT TAGCCAGGTT CGGTGGCGAA
GAATTCGCCT TAATAATGGT AGCGACCCCC ATAGAAAAAG GTTTTACACA AGTTGATGAA
TTGCGTAAAA AGCTAATGAG TACGCCTTTC TCAACCACTA AATGTGATAT CAAAATTACC
CTAAGTGCTG GATTGTCTAC TTACGGTGCT GACGGGGAAG ATTTAAACCA ACTGCTAAAT
AAAGCAGATA GACGTTTATA TTATGCCAAA GAAAATGGCC GTAATCAGGT CATCGCTCAT
GATGATGAAG CCAAGCAATA A
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| Protein sequence | MTDQLVQNYK YRRDIMVVLL MVTFLGGVIF SIINFYRGLW SLASIELSYG VFSLWLWFRI
QNTKHFQRWV TIYVVPFFII MIYGLSLPQS SESIFVWILT IPVISYLLMG RVRGFWFSTT
FIICGIFAYH WRFIREDHLL SLNVAISTNV ILSSLLMMAF AHVYERTREE NEGRLLSLAG
TDPLTGLANR MKLNEGFQQL SALATRHNTP LTVVLFDLDL FKTINDVHGH SVGDDALRHV
ATFLRKNTRK TDLLARFGGE EFALIMVATP IEKGFTQVDE LRKKLMSTPF STTKCDIKIT
LSAGLSTYGA DGEDLNQLLN KADRRLYYAK ENGRNQVIAH DDEAKQ
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