| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1914 |
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| Symbol | |
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| ID | 4172760 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2317906 |
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| End bp | 2318673 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054922 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_661486 |
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| Protein GI | 109898231 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.142248 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTCAT TATTAGATTT TAACGGTCAA GTGGCATTAA TTACGGGTGC AGGCAGTGGC
TTCGGTCGTT TATTGTCAAA AGGGTTAGCT GAGCGTGGTT GTAAGTTGGT GATCAGCGAT
ATCGACCCAA AAGGTTTAGC CGAAACAGTT GAAGGCCTGA GTGAATTTGC AGATAGCATT
GTCGCCCAGC ATTGCGATGT ATCAAAAGAA GCTGATTGCA AAGCCATGGT TGACAGCGCG
ATGGACAAAT TTGGTCGAGT GGACATTGGC GTCAACAACG CAGGCATCGC TCACAGCATG
GCACCTATGC ACACCCTTGA TGAAGCGACC ATGGACAAAC AAATGGACGT GAACGTCAAA
GGCGTTATGT TCGGCATGAA GTACCAAATT GAAGTCATGC TTAAACAAGG TAGCGGTCAT
ATTCTAAACG TGAGTTCACT TGCTGGTCTG GGTGGTGCAC CGAAAGGCGC TGCTTACTCA
GCAGCAAAAC ACGCGGTTAT CGGGTTAACC AAAACGGCGG CGATTGAATA TGCACGCAAA
GGTATCCGCG CAAACTCAAT ATGTCCTTTC TATACTCCAA CCAATATATT GAATATTGAC
GGTGAAATAT CGCAAGAAGG CATTAATCAA TTAGCAGTAG GTTGCCCGAT GAAGCGCCTT
GCTACGCCCC AAGAAATTGT TAACGCCATG CTATTAGTGC TTTCACCCGG CAACACCTAC
ATGACAGGTC AATCTATCGC CCTTGATGGT GGTGTGACTG CTTGGTAG
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| Protein sequence | MDSLLDFNGQ VALITGAGSG FGRLLSKGLA ERGCKLVISD IDPKGLAETV EGLSEFADSI
VAQHCDVSKE ADCKAMVDSA MDKFGRVDIG VNNAGIAHSM APMHTLDEAT MDKQMDVNVK
GVMFGMKYQI EVMLKQGSGH ILNVSSLAGL GGAPKGAAYS AAKHAVIGLT KTAAIEYARK
GIRANSICPF YTPTNILNID GEISQEGINQ LAVGCPMKRL ATPQEIVNAM LLVLSPGNTY
MTGQSIALDG GVTAW
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