| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1906 |
|---|
| Symbol | |
|---|
| ID | 4172752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2305171 |
|---|
| End bp | 2306280 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 638054914 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_661478 |
|---|
| Protein GI | 109898223 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCATAA AATTACTAGG TCAGTTTCTT ATTCTCGTGT GTATTAGCCA TTTTTGTTTT
GCAGAACAAA CAAGTTTTGT ATCACAAAAA ATTGATAAGC ATATTGGGAA ATATGTTGAG
GAAGAAGCTT TTAAAGGGGT CGTATTAGTT GCTAAAGAAG GGAAGGTGAT CTTTAAATCT
GCATATGGAA ATGCTGATGA AAATAATAGT ATACCCAACA CAGTGGATCA CAAGTTCTTG
ATAGGTTCAT TAACAAAATC ATTTACCGCT GTTACCGTGA TGAAATTAGT TGATAAAGGT
AAATTGAATT TAACCGCCCC GATATCTACC TACATACCGA ATTTACGTAA AAATATTGGC
CAAGACTTAA CGTTACACCT GTTACTAAAG CATCAGTCAG GTCTTCCTCA GCATTTAGAA
AGACTAGCGA GTTTTGAAGA TAAAGATGTT TCTTCAGACG AGATATTGGC CATTATCAAT
ACTGCGAGTT TGGCCTTTGT GCCTGGAACA CAATATCAAT ATTCAAATTT AAATTATCAC
CTAGCCGCCA TTGCAATAGA GAACGTGACG GGCAAGACGT ATGCTCAAGT TCTTCAAGAT
GAGATTTTTT CTCCCTTGAA AATGGGCAGC TCAGGCGTTG AACGTCTGAA TAATGTCCCT
GTTAATAGAG CAAATGGTTA CCGCAAAGGA TTTTTGGGTA CCAACAGGGC AGAAAACATT
GTGTCTTATG CGTTGGGCTC TGGGGATATT TATTCTACAG TGGATGATTT ACTCACTTGG
GAACAATCAC TATACAACAA CCAACTTTTA TCAGAAAAGA GCCAAAGGTT GTTGTTTGCC
GGTGAGAACA ATGATTTTGG AGATTATGGC TATGGATTTA GGGTGCAGCA ATATCAAAGA
GCCGCTGGCA AAAATAATGG TACCTTAACA AGACATGGCG GGTCGATGGA TGGCTTTTTA
ACAAATTTAC ACCGTTATAC AGATGACAAG CTGACTGTTA TTATCTTAGC GAATATCCGT
AACTTTCCTA TCAGGAATTT AACCTTCGAG ATTAAGGAAA TCGCAATGGG CCTTGCCGTT
GGTGATCGTA ACCGAGCGGA ATTTGAGTGA
|
|---|
| Protein sequence | MLIKLLGQFL ILVCISHFCF AEQTSFVSQK IDKHIGKYVE EEAFKGVVLV AKEGKVIFKS
AYGNADENNS IPNTVDHKFL IGSLTKSFTA VTVMKLVDKG KLNLTAPIST YIPNLRKNIG
QDLTLHLLLK HQSGLPQHLE RLASFEDKDV SSDEILAIIN TASLAFVPGT QYQYSNLNYH
LAAIAIENVT GKTYAQVLQD EIFSPLKMGS SGVERLNNVP VNRANGYRKG FLGTNRAENI
VSYALGSGDI YSTVDDLLTW EQSLYNNQLL SEKSQRLLFA GENNDFGDYG YGFRVQQYQR
AAGKNNGTLT RHGGSMDGFL TNLHRYTDDK LTVIILANIR NFPIRNLTFE IKEIAMGLAV
GDRNRAEFE
|
|---|
| |