| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1900 |
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| Symbol | |
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| ID | 4172745 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2297708 |
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| End bp | 2298658 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638054909 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_661474 |
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| Protein GI | 109898219 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00385171 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGTAT TAAATCAATT ATTCGCGACC TTTAAAGTCT CTGCAAACGT CTTCCACAAC
GGGCAATACT GTGGCAGTTG GGCCATCAAT ACTTCGGGCA CACATTACAT GAACTTTCAT
GTTGTTAGCC ACGGCACGTG TTTTTTGACC TTGCCTAGCG TTAAACGTGA GAGTGAACAT
GAAGGTGATA AACACAGCGA ATGCGACCAA AAGCAAAACA CCGTTATCGA ATTGGTACAG
GGCGATGTCG TGTTGTTCCC CCGCGATAGC GAGCACGTCA TCAGTGGCGA TTTAGGATCG
TCGGCAGTGG TCAATACCGC GGCTTCTCAG AACTATGCAA GTGGCATCCA TCCCAGTGCT
ACCGGGTTAG TCTGTGGTTA TTTCAGCCAT CACCATCCGC TTGTCGCTAG TGTAACAAAG
CATTTACCCA GCGTTATCAT CATAAAACAC CAAACAGTCA GCACCAGTGC GTCGGGGTTA
AACTATTTAC TTGATGCCCT GCTAGATGAA TCAAAGCAGC CTAATAAAGG ATCTGCACTG
ATTATGGGCC GTATCGCCGA GGCGATTCTA GCCATCATTT TTCGGGAACA TTTGCCAGCG
GACAATGGCA TGCTTGCGGC CACGGCTCAC CCAAAACTGG GAGCCGCTAT GGCAGCTATT
CACAGCGAGC CTGACAAAAA ATGGACCGTG GAAATGCTCG CCCAGCGGTG CTTTATGTCG
CGAGCGGGTT TTAACGAATT ATTCAAGTCT GTGCTGCACC AATCCCCGAT GGAATATGTT
ACGCAGTGGC GTTTAGGCCT AGCCTACAGG ATGTTAGCCG ATGAAAACGT GACGACCTTG
CATGCGGCGC TTGCTAGTGG CTACGAAAAT GAGTCGTCAT TTTCAAAAGC GTTCAAGCGG
GTACTTGGTG TTAGCCCCGG TGCGGTGCGG GCTTTAAGTG AACAGCAGTA G
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| Protein sequence | MDVLNQLFAT FKVSANVFHN GQYCGSWAIN TSGTHYMNFH VVSHGTCFLT LPSVKRESEH
EGDKHSECDQ KQNTVIELVQ GDVVLFPRDS EHVISGDLGS SAVVNTAASQ NYASGIHPSA
TGLVCGYFSH HHPLVASVTK HLPSVIIIKH QTVSTSASGL NYLLDALLDE SKQPNKGSAL
IMGRIAEAIL AIIFREHLPA DNGMLAATAH PKLGAAMAAI HSEPDKKWTV EMLAQRCFMS
RAGFNELFKS VLHQSPMEYV TQWRLGLAYR MLADENVTTL HAALASGYEN ESSFSKAFKR
VLGVSPGAVR ALSEQQ
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