Gene Patl_1894 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1894 
Symbol 
ID4172739 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2290228 
End bp2291889 
Gene Length1662 bp 
Protein Length553 aa 
Translation table11 
GC content48% 
IMG OID638054903 
Productlytic transglycosylase, catalytic 
Protein accessionYP_661468 
Protein GI109898213 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0630277 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGCTTAC ATACCCTACT ATGCCTATCG CTAGTGTCTA TTTTACCGGC CTGTCAGATG 
ATGGAGCCTC ATTCAGACAT AGCTGAACAG ATAGACCAAG AGCACGAAAT AGCGCAAGAA
ATTGCCATGA CATGCGAACA ATCCGGTGAG TTAGCTGATC AGGCATTCGA CTGTGAAGCG
GCGGATGAAG GTATTATACC TGTCACCCAC CCAGAAGAAG AGGTCGAGGT CACAATTGAA
CCAGAGCCAA TCCCGCAAGA CGTTGCCGCA CTCGACGTAT GGCAATACGT GGGTCAACAC
CTCGCTTTGG ACTTTGAAGA CAACAAACGC ATTGCTAGTC AGCGCAACTG GTACCTAAAA
CACCCCAGCT ACATGCAACG TGTTGCAAAG CGTGCTAAGC CATTTTTGTA CCTGATTGTA
GAGCGCCTTG AAAGTGAAAA TATGCCTATG GAACTAGCGC TTTTACCCAT AGTAGAAAGC
GCCTTTGACC CTTTCGCCTA TTCACATGGC CGCGCTGCGG GTATGTGGCA ATTCGTACCG
GCAACGGGCA AACGTTTTGG CATGAAGCAA ACATGGTGGT ATGACGGGCG CCGTGATGTC
ATGGCATCAA CTGATGGCGC AATTGCTTAC TTGAAGTACT TAAACGAAAT GTTTGACGGC
AACTGGTTAC ACGCCCTTGC AGCTTACAAC AGCGGTGAAG GTCGTGTTAT GCGCGCCATT
AAAAAGAATA AAAAAGCGGG TAAAAGCACA GAATACTGGG CCCTAGATTT ACCCAGAGAG
ACCCGCGCTT ACGTCCCCAA ATTATTGGCC TTGGCAGACA TACTTAGAAA CGCAGAAACC
TATGCGTTCA AATGGCCTGT TATCGAAAAT ATCAAAGTGA CTGAAGAAGT CGATGTCGGC
TCGCAAATTG ATTTGGCCCT TGCTGCTGAT ATGGCAGGTC TTACGGTTGA AGAGCTGCAT
GCGTTAAACC CAGGTTATAA TCGCTGGGCT ACCGACCCCG AAGGGCCGTT TAAGCTGCTT
GTGCCAGTGG ATAAAGCAGA CACCTTTAGT GACGCTATTG CGGCAACCGA AACCAAAGAG
CGTTTAAACT GGGTTCGCCA CAAAATTAAG AGCGGCGACA GTCTGTTGAA ACTAGCGCAC
AAATATCACA CTACCACAGA CATTATTAGC CAAGTAAATG AGTTAAAAGG CAATGTGATC
CGCGCTGGGG AATACTTGGT TATACCTGTG GCATTAAAAT CACTGGACTT TTATTCACTC
TCTCAAGAGC AGCGCTTAGC GGATACGCAG TCTAAGCACA AAAGCGGGAC GTATCAGGTC
AAGCACAGAG TCAAAAATGG CGACACCATG TGGGATATAA GTCGTAAATA TAAAGTCAAC
ATGCGCAGCT TAGCCAAGTG GAATGGTATG GCCCCTACGG ACATGTTGCG CCCAGGTAAA
GAGCTAGTGG TATGGCTTAA GGGCAAGGAC AGCAAAAAAC ACAGCGATGC GGTAATACGC
ACCCTCACCT ACACAGTGCG CGGCGGTGAT TCATTGGCCA GAATCGCGCA AAAATTTAAG
GTCAATGTGT CAGACTTGGT CGCATGGAAT CAAATAAGTA CCCAAAAATA CCTACAACCC
GGCCAGAAGC TTAAAATCAA GGTGGATGTC ACTCGCACCT AA
 
Protein sequence
MRLHTLLCLS LVSILPACQM MEPHSDIAEQ IDQEHEIAQE IAMTCEQSGE LADQAFDCEA 
ADEGIIPVTH PEEEVEVTIE PEPIPQDVAA LDVWQYVGQH LALDFEDNKR IASQRNWYLK
HPSYMQRVAK RAKPFLYLIV ERLESENMPM ELALLPIVES AFDPFAYSHG RAAGMWQFVP
ATGKRFGMKQ TWWYDGRRDV MASTDGAIAY LKYLNEMFDG NWLHALAAYN SGEGRVMRAI
KKNKKAGKST EYWALDLPRE TRAYVPKLLA LADILRNAET YAFKWPVIEN IKVTEEVDVG
SQIDLALAAD MAGLTVEELH ALNPGYNRWA TDPEGPFKLL VPVDKADTFS DAIAATETKE
RLNWVRHKIK SGDSLLKLAH KYHTTTDIIS QVNELKGNVI RAGEYLVIPV ALKSLDFYSL
SQEQRLADTQ SKHKSGTYQV KHRVKNGDTM WDISRKYKVN MRSLAKWNGM APTDMLRPGK
ELVVWLKGKD SKKHSDAVIR TLTYTVRGGD SLARIAQKFK VNVSDLVAWN QISTQKYLQP
GQKLKIKVDV TRT