| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1862 |
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| Symbol | |
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| ID | 4173047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2251723 |
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| End bp | 2254044 |
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| Gene Length | 2322 bp |
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| Protein Length | 773 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054871 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661436 |
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| Protein GI | 109898181 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.610045 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATTGA TGATGAGATA TGTAGTCGCA GTCGGTGTAA TGTTAAGTTT TGAGGGCATG
GCAAGTGAAA TCGCCAGTCT TGAAACAATC AGTGTGTTTG GCCAAAATCC TCTTTTTAGT
GAACACAACA CCACCAGTAT CATTGGCAGT ATACAAACCA TTAGCACAGA GGAGCTAGCG
CAAAGCAATG CGCTCTCGCT GTCGCAACAC ATGAAAAATC GCTTAAACAG TGTGCATATC
AACGATGTAC AGAACAATCC TTTTCAACCT GACGTGCAGT ACCGCGGATT TACCGCGTCG
CCTTTGCTTG GGTTACCACA AGGTATTTCT TTATACCTCA ACGGTATTCG ATTTAACGAA
CCATTTGGCG ATACCGTCAA CTGGGATCTT ATTCCTTTTG CTGCCCTTGA TAGCGTCGCG
TTGTACTCGG GCTCGAACCC TAGTTTTGGG CAAAATACCT TAGGCGGTGC ATTAGACATG
CGGGTCAAAA ATGGTTTCAC CTTCGTGCGT AATGAACTGG ACCTACAAAT AGCCAGCTTC
GGTCAACGCC AAGCGACGGT GCAAAGCGGC GGAAACAATG GCCGTTGGGG CTATTATGTG
GCGATTAACC GTTTGAGCGA AGACGGCTGG CGAGACTTTT CAAGCAGTGA TTTGAAACAG
GTGCTAGGCA CACTAACCTA CCAAGGGGAT ATTCATCACC TTGAGTTATT CGCCGCGGCT
AATGACAACG CCCTGACCGG CAATGGTGCT GTGCCCGAGG GATTACAAGT CGCCCAGGGG
TACGACGCCA TTTACACCTA CCCGGATAAA ACCGAAAACG ATCACCGCAT GTTTGCGCTT
AGTAGTGAGT CAGCGTTAGG CAACGGTTTT ACAATGCAAG CAAACAGCTA TTACAGACGC
AACAATATTG ACACCACTAA CGGTGATGAC AGCGACTACG AAGAATGTGA GTTTAATAAT
GTTGTTACCT TGTGTGAGGA AGAAGATGAC GAGGTAGAGC GGGTTGAGTT TGTGGGTCAT
GCCCCAGAGG TAAGCTTCAG TGACATTTCT GATGTGGACG CTGACGATAT AGACGGCACG
TTGAACCAAA GCGCTACTGA AAACAAAAGT TATGGCGTAG CTTTGCAGCT TATGCACAGT
AAAAAAACTC AGCACGCAGA GCATGAGTGG GTCATTGGTG GCGGAATTGA TCAAGCTGAT
ATCGATTTTA TCAGTGATAC CGAGTTTGGT ATTTTGCATA ACAGCACACC AGAGGATGAC
CGTTCAGTAT CACCCACAGG ATTTTTTGAT AGTGAGTCTC AAGTGAGACT AGGGGTAAAA
ACTTATGAAC ACTACCTCTA CTCAGGTTAC TCAGTGCGCT TTGATGAGCG CTGGTTACTC
AGTGTCTCTG GGCGCTATAA CGACAGTAAA ATATCGATGC ATGACAGGAT AGATGTTGGT
GAGGGCTCGT TAAACGGCGA GCACCATTTC AATCGTTTCA ACCCAGCGTT AGGCGTTCAG
TATTCTGTTT CTCAAAAATG GGATATATCA CTGAGTTACA GCGAGTCGTC ACGTATGCCA
AGCCCAGCAG AGCTAAGTTG TGCCGATGAA GATGACCCGT GTAAATTACC CAATGGTTTT
GTGGCCGATC CGCCATTGAA TAAAGTCGTT GCGAAAACCA TTGAGGCGTC AGTTGATTAT
CACACTGATG CTAATACGCT AACGGCCACT TTATATCGCA CCAAAAGCGT GGATGACATT
ATTTTTCAAC AAGCGGGTGT GACGCAGTCA GAGGGCTACT TTATCAATGT TGATAAAACC
AATCGGCAAG GGGCAGAACT GTCTTTCTTG CATCAGCGAG AAAACCTTAG CTTTGGTGCC
AATTACAGCT ACTTAGACGC TACTTTCGAA TCAGAATTTG TCACATTTAG TCCGAATAAT
CCCTTAGGAG GAGGTCGACA AGTGGAAGCT GGAGACACGA TCCCTGGCCA GCCTCAGCAT
CAAGTGAAAA TGCACACCGA TTGGGCACTG AACGAAGCAC TGAGTGTAGG CGCCGAGTGG
TTGTTCTCAT CGTCATCGTA TTACCGCGGG GATGAAGCAA ATGAGAATAA AAAAATATCG
TCTTACGCGA TTGCCAATGT GTATGCCAAG TATCAAGTAA GTGAGTCTGT GCAGCTTTCA
GCGCGGATCG ATAACGCCTT TGACCGCCAA TACCATACCT TTGGTACCTA TGGTGAGCCA
GACGAGGTGT TAGAGGATGT ATACCCTGAA ATTGATGAGG CTTTTTTTGT TGGCCCAGGC
AGTCCAAGAC GAGTAACGGC CAATGTGCAG GTACAGTTTT AA
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| Protein sequence | MELMMRYVVA VGVMLSFEGM ASEIASLETI SVFGQNPLFS EHNTTSIIGS IQTISTEELA
QSNALSLSQH MKNRLNSVHI NDVQNNPFQP DVQYRGFTAS PLLGLPQGIS LYLNGIRFNE
PFGDTVNWDL IPFAALDSVA LYSGSNPSFG QNTLGGALDM RVKNGFTFVR NELDLQIASF
GQRQATVQSG GNNGRWGYYV AINRLSEDGW RDFSSSDLKQ VLGTLTYQGD IHHLELFAAA
NDNALTGNGA VPEGLQVAQG YDAIYTYPDK TENDHRMFAL SSESALGNGF TMQANSYYRR
NNIDTTNGDD SDYEECEFNN VVTLCEEEDD EVERVEFVGH APEVSFSDIS DVDADDIDGT
LNQSATENKS YGVALQLMHS KKTQHAEHEW VIGGGIDQAD IDFISDTEFG ILHNSTPEDD
RSVSPTGFFD SESQVRLGVK TYEHYLYSGY SVRFDERWLL SVSGRYNDSK ISMHDRIDVG
EGSLNGEHHF NRFNPALGVQ YSVSQKWDIS LSYSESSRMP SPAELSCADE DDPCKLPNGF
VADPPLNKVV AKTIEASVDY HTDANTLTAT LYRTKSVDDI IFQQAGVTQS EGYFINVDKT
NRQGAELSFL HQRENLSFGA NYSYLDATFE SEFVTFSPNN PLGGGRQVEA GDTIPGQPQH
QVKMHTDWAL NEALSVGAEW LFSSSSYYRG DEANENKKIS SYAIANVYAK YQVSESVQLS
ARIDNAFDRQ YHTFGTYGEP DEVLEDVYPE IDEAFFVGPG SPRRVTANVQ VQF
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